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Aliases for LRRC37A4P Gene

Aliases for LRRC37A4P Gene

  • Leucine Rich Repeat Containing 37 Member A4, Pseudogene 2 3 5
  • LRRC37A4 3
  • LRRC37 3

External Ids for LRRC37A4P Gene

Previous HGNC Symbols for LRRC37A4P Gene

  • LRRC37A4

Previous GeneCards Identifiers for LRRC37A4P Gene

  • GC17M043580
  • GC17M043600

Summaries for LRRC37A4P Gene

GeneCards Summary for LRRC37A4P Gene

LRRC37A4P (Leucine Rich Repeat Containing 37 Member A4, Pseudogene) is a Pseudogene.

Additional gene information for LRRC37A4P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LRRC37A4P Gene

Genomics for LRRC37A4P Gene

GeneHancer (GH) Regulatory Elements for LRRC37A4P Gene

Promoters and enhancers for LRRC37A4P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J046189 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 64.1 -643.2 -643238 7.6 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 KANSL1 KANSL1-AS1 LINC02210 ENSG00000262372 ARL17A ARL17B LRRC37A4P RPS7P11 RPS2P47 LRRC37A2
GH17J046263 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE 73.2 -715.6 -715590 4.5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1 ENSG00000261575 LOC100132570 LRRC37A4P LINC02210 KANSL1 ENSG00000262372 ARL17B ARL17A KANSL1-AS1 RPS7P11
GH17J046224 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 56.7 -674.8 -674766 1.8 HDGF PKNOX1 ATF1 SMAD1 SIN3A ZNF48 GLIS2 ZNF143 ATF7 FOS KANSL1 LINC02210 LRRC37A4P ENSG00000262372 ARL17A MAP3K14-AS1 RPS2P47 ARL17B ENSG00000238723 GC17M046216
GH17J046106 Enhancer 1.3 Ensembl ENCODE dbSUPER 69.6 -557.7 -557666 2.4 PKNOX1 ATF1 FOXA2 ARID4B FEZF1 ETS1 ZNF766 KLF7 ATF7 MXD4 LINC02210 LRRC37A4P NSFP1 KANSL1 LOC101927060 LRRC37A17P KANSL1-AS1 PIR51062 PIRC95
GH17J046153 Enhancer 1.3 Ensembl ENCODE dbSUPER 67.5 -605.7 -605740 4.3 HDGF PKNOX1 SMAD1 FEZF1 ZNF2 IRF4 ZNF121 ZNF207 ZNF143 ATF7 LINC02210 LRRC37A4P ARL17B ARL17A LRRC37A17P KANSL1 ENSG00000262372 KANSL1-AS1 PIR51062 PIRC95
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRRC37A4P on UCSC Golden Path with GeneCards custom track

Genomic Locations for LRRC37A4P Gene

Genomic Locations for LRRC37A4P Gene
chr17:45,505,883-45,550,335
(GRCh38/hg38)
Size:
44,453 bases
Orientation:
Minus strand
chr17:43,578,685-43,627,701
(GRCh37/hg19)
Size:
49,017 bases
Orientation:
Minus strand

Genomic View for LRRC37A4P Gene

Genes around LRRC37A4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LRRC37A4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC37A4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC37A4P Gene

Proteins for LRRC37A4P Gene

Post-translational modifications for LRRC37A4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC37A4P Gene

Domains & Families for LRRC37A4P Gene

Suggested Antigen Peptide Sequences for LRRC37A4P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LRRC37A4P Gene

Function for LRRC37A4P Gene

Phenotypes From GWAS Catalog for LRRC37A4P Gene

genes like me logo Genes that share phenotypes with LRRC37A4P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC37A4P Gene

Localization for LRRC37A4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRRC37A4P Gene

Pathways & Interactions for LRRC37A4P Gene

SuperPathways for LRRC37A4P Gene

No Data Available

Interacting Proteins for LRRC37A4P Gene

Gene Ontology (GO) - Biological Process for LRRC37A4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LRRC37A4P Gene

Drugs & Compounds for LRRC37A4P Gene

No Compound Related Data Available

Transcripts for LRRC37A4P Gene

mRNA/cDNA for LRRC37A4P Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LRRC37A4P Gene

Leucine rich repeat containing 37, member A4, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC37A4P Gene

No ASD Table

Relevant External Links for LRRC37A4P Gene

GeneLoc Exon Structure for
LRRC37A4P
ECgene alternative splicing isoforms for
LRRC37A4P

Expression for LRRC37A4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LRRC37A4P Gene

mRNA differential expression in normal tissues according to GTEx for LRRC37A4P Gene

This gene is overexpressed in Brain - Cerebellum (x5.2), Brain - Cerebellar Hemisphere (x4.9), and Testis (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of LRRC37A4P Gene:

LRRC37A4P

SOURCE GeneReport for Unigene cluster for LRRC37A4P Gene:

Hs.596756
genes like me logo Genes that share expression patterns with LRRC37A4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC37A4P Gene

Orthologs for LRRC37A4P Gene

Evolution for LRRC37A4P Gene

ENSEMBL:
Gene Tree for LRRC37A4P (if available)
TreeFam:
Gene Tree for LRRC37A4P (if available)

No data available for Orthologs for LRRC37A4P Gene

Paralogs for LRRC37A4P Gene

No data available for Paralogs for LRRC37A4P Gene

Variants for LRRC37A4P Gene

Sequence variations from dbSNP and Humsavar for LRRC37A4P Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000563862 -- 45,511,272(-) C/T intron_variant
rs1000992141 -- 45,510,979(-) T/G intron_variant
rs1001887272 -- 45,510,158(-) C/T intron_variant
rs1002085256 -- 45,510,825(-) A/G intron_variant
rs1002576990 -- 45,521,070(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LRRC37A4P Gene

Variant ID Type Subtype PubMed ID
dgv123e55 CNV loss 17911159
dgv124e55 CNV loss 17911159
dgv1473n106 CNV duplication 24896259
dgv1760e59 CNV duplication 20981092
dgv3176n100 CNV gain 25217958
dgv5610n54 CNV loss 21841781
dgv5611n54 CNV loss 21841781
dgv5612n54 CNV loss 21841781
dgv5613n54 CNV loss 21841781
dgv927e212 CNV loss 25503493
dgv928e212 CNV gain 25503493
esv26189 CNV gain+loss 19812545
esv2758691 CNV gain+loss 17122850
esv2760446 CNV loss 21179565
esv2762433 CNV gain+loss 21179565
esv33076 CNV gain+loss 17666407
esv3640666 CNV loss 21293372
nsv1077843 CNV duplication 25765185
nsv1146669 OTHER inversion 26484159
nsv161 CNV insertion 15895083
nsv162 CNV insertion 15895083
nsv2063 CNV insertion 18451855
nsv428342 CNV gain 18775914
nsv442746 CNV loss 18776908
nsv509659 CNV insertion 20534489
nsv511056 OTHER complex 20534489
nsv514848 CNV gain 21397061
nsv524234 CNV loss 19592680
nsv575106 CNV loss 21841781
nsv575116 CNV loss 21841781
nsv575121 CNV loss 21841781
nsv820961 CNV duplication 20802225
nsv953905 CNV deletion 24416366
nsv9563 CNV gain+loss 18304495
nsv962329 CNV duplication 23825009
nsv962404 CNV duplication 23825009

Additional Variant Information for LRRC37A4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC37A4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LRRC37A4P Gene

Disorders for LRRC37A4P Gene

Additional Disease Information for LRRC37A4P

No disorders were found for LRRC37A4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LRRC37A4P Gene

Publications for LRRC37A4P Gene

  1. Evolutionary dynamism of the primate LRRC37 gene family. (PMID: 23064749) Giannuzzi G … Eichler EE (Genome research 2013) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LRRC37A4P Gene

Sources for LRRC37A4P Gene

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