Aliases for LRRC37A16P Gene

Aliases for LRRC37A16P Gene

  • Leucine Rich Repeat Containing 37 Member A16, Pseudogene 2 3 5
  • Leucine Rich Repeat Containing 37, Member A3 Pseudogene 3
  • LRRC37C 3

External Ids for LRRC37A16P Gene

Previous GeneCards Identifiers for LRRC37A16P Gene

  • GC17M066122

Summaries for LRRC37A16P Gene

GeneCards Summary for LRRC37A16P Gene

LRRC37A16P (Leucine Rich Repeat Containing 37 Member A16, Pseudogene) is a Pseudogene.

Additional gene information for LRRC37A16P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LRRC37A16P Gene

Genomics for LRRC37A16P Gene

GeneHancer (GH) Regulatory Elements for LRRC37A16P Gene

Promoters and enhancers for LRRC37A16P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J068152 Enhancer 0.7 FANTOM5 750.6 -0.1 -89 0.2 L3MBTL2 DACH1 GTF2F1 ZFX EGR1 IKZF1 ATF1 NR2C1 MGA MTA3 LRRC37A16P lnc-AMZ2-10 lnc-SLC16A6-2 WIPI1 LOC105371871
GH17J068032 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 52.8 +116.7 116692 5.6 E2F8 SIN3A SP1 LCORL RBPJ SMARCE1 POLR2A USF2 HDAC2 ATF1 KPNA2 LRRC37A16P NOL11 HELZ BPTF SH3GL1P3 RDM1P3 piR-58297-216
GH17J068100 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 50.8 +49.8 49774 3.8 SREBF1 MLX RBPJ POLR2A USF2 NFYC L3MBTL2 MAX MNT ZKSCAN8 ENSG00000265055 LINC00674 LRRC37A16P SH3GL1P3 ENSG00000265100 piR-55655-248
GH17J067992 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 26.9 +158.1 158054 5.2 E2F8 ZNF785 SIN3A ZBTB40 RBPJ SMARCE1 ZNF362 CC2D1A ZNF701 ELF1 C17orf58 HELZ NOL11 BPTF LRRC37A16P ENSG00000267731 ENSG00000265100 WIPI1 ARHGAP27P2 AMZ2
GH17J068061 Enhancer 1 Ensembl ENCODE dbSUPER 55.5 +90.5 90470 1.2 MNT BCL6B MYC ZNF687 ZNF644 FOSL2 RNF2 MIER3 JUNB BATF LRRC37A16P piR-58297-216 KPNA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRRC37A16P on UCSC Golden Path with GeneCards custom track

Genomic Locations for LRRC37A16P Gene

Genomic Locations for LRRC37A16P Gene
chr17:68,125,777-68,152,471
(GRCh38/hg38)
Size:
26,695 bases
Orientation:
Minus strand
chr17:66,121,918-66,149,006
(GRCh37/hg19)
Size:
27,089 bases
Orientation:
Minus strand

Genomic View for LRRC37A16P Gene

Genes around LRRC37A16P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LRRC37A16P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC37A16P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC37A16P Gene

Proteins for LRRC37A16P Gene

Post-translational modifications for LRRC37A16P Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC37A16P Gene

Domains & Families for LRRC37A16P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LRRC37A16P Gene

Function for LRRC37A16P Gene

Phenotypes From GWAS Catalog for LRRC37A16P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC37A16P Gene

Localization for LRRC37A16P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRRC37A16P Gene

Pathways & Interactions for LRRC37A16P Gene

PathCards logo

SuperPathways for LRRC37A16P Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRRC37A16P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LRRC37A16P Gene

Drugs & Compounds for LRRC37A16P Gene

No Compound Related Data Available

Transcripts for LRRC37A16P Gene

mRNA/cDNA for LRRC37A16P Gene

(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC37A16P Gene

No ASD Table

Relevant External Links for LRRC37A16P Gene

GeneLoc Exon Structure for
LRRC37A16P
ECgene alternative splicing isoforms for
LRRC37A16P

Expression for LRRC37A16P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LRRC37A16P Gene

NURSA nuclear receptor signaling pathways regulating expression of LRRC37A16P Gene:

LRRC37A16P
genes like me logo Genes that share expression patterns with LRRC37A16P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC37A16P Gene

Orthologs for LRRC37A16P Gene

Evolution for LRRC37A16P Gene

ENSEMBL:
Gene Tree for LRRC37A16P (if available)
TreeFam:
Gene Tree for LRRC37A16P (if available)

No data available for Orthologs for LRRC37A16P Gene

Paralogs for LRRC37A16P Gene

No data available for Paralogs for LRRC37A16P Gene

Variants for LRRC37A16P Gene

Additional Variant Information for LRRC37A16P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC37A16P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LRRC37A16P Gene

Disorders for LRRC37A16P Gene

No disorders were found for LRRC37A16P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LRRC37A16P Gene

Publications for LRRC37A16P Gene

  1. Evolutionary dynamism of the primate LRRC37 gene family. (PMID: 23064749) Giannuzzi G … Eichler EE (Genome research 2013) 2 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LRRC37A16P Gene

Sources for LRRC37A16P Gene