Aliases for LRRC3-DT Gene

Subcategory (RNA class) for LRRC3-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LRRC3-DT Gene

  • LRRC3 Divergent Transcript 2 3 5
  • LRRC3-DT 2 5 165
  • LRRC3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • LRRC3 Antisense RNA 1 (Head To Head) 2 3
  • LRRC3 Antisense RNA 1 2
  • NONHSAG033029.2 91
  • HSALNG0133537 164
  • LRRC3-AS1 3

External Ids for LRRC3-DT Gene

Previous HGNC Symbols for LRRC3-DT Gene

  • LRRC3-AS1

Summaries for LRRC3-DT Gene

GeneCards Summary for LRRC3-DT Gene

LRRC3-DT (LRRC3 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LRRC3-DT include Renal Cell Carcinoma, Papillary, 1.

Additional gene information for LRRC3-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LRRC3-DT Gene

Genomics for LRRC3-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LRRC3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J044455 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.3 -316 2 HNRNPL PRDM10 ZNF692 ZIC2 RBFOX2 PATZ1 CTCF SP1 ZNF341 KLF9 LRRC3 LRRC3-DT piR-33469 CFAP410 KRTAP10-1
GH21J044444 Enhancer 0.7 ENCODE 0.4 +10.7 10662 0.1 HNRNPL GATAD2A CTCF KDM1A RXRB GABPA CBX3 RNF2 BCOR SAP130 ENSG00000264452 LRRC3 LRRC3-DT TRPM2
GH21J044448 Enhancer 0.4 CraniofacialAtlas 0.4 +6.6 6567 0.4 HNRNPL NR2F6 XRCC5 ENSG00000264452 LRRC3 LRRC3-DT TRPM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRRC3-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LRRC3-DT Gene

Genomic Locations for LRRC3-DT Gene
chr21:44,443,324-44,455,285
(GRCh38/hg38)
Size:
11,962 bases
Orientation:
Minus strand
chr21:45,870,869-45,875,167
(GRCh37/hg19)
Size:
4,299 bases
Orientation:
Minus strand

Genomic View for LRRC3-DT Gene

Genes around LRRC3-DT on UCSC Golden Path with GeneCards custom track
LRRC3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LRRC3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC3-DT Gene

Proteins for LRRC3-DT Gene

Post-translational modifications for LRRC3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC3-DT Gene

Domains & Families for LRRC3-DT Gene

Gene Families for LRRC3-DT Gene

genes like me logo Genes that share domains with LRRC3-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LRRC3-DT Gene

Function for LRRC3-DT Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC3-DT Gene

Localization for LRRC3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRRC3-DT Gene

Pathways & Interactions for LRRC3-DT Gene

PathCards logo

SuperPathways for LRRC3-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRRC3-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LRRC3-DT Gene

Drugs & Compounds for LRRC3-DT Gene

No Compound Related Data Available

Transcripts for LRRC3-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LRRC3-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000048302B_9606 lncRNA 784 3

Ensembl: ENST00000426578 (view in UCSC) ,

LNCipedia: LRRC3-DT:9,

NONCODE: NONHSAT082520.2,

URS000075EBD0_9606 lncRNA 784 2

HGNC: 43636,

RefSeq: NR_047476,

URS00008B427A_9606 lncRNA 589 3

LncBook: HSALNT0274479,

LNCipedia: LRRC3-DT:12,

NONCODE: NONHSAT082522.2,

URS00008BCD41_9606 lncRNA 577 3

LncBook: HSALNT0274478,

LNCipedia: LRRC3-DT:13,

NONCODE: NONHSAT082521.2,

URS00008B21BB_9606 lncRNA 340 3

LncBook: HSALNT0274472,

LNCipedia: LRRC3-DT:15,

NONCODE: NONHSAT082519.2,

LRRC3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LRRC3-DT Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC3-DT Gene

No ASD Table

Relevant External Links for LRRC3-DT Gene

GeneLoc Exon Structure for
LRRC3-DT

Expression for LRRC3-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC3-DT Gene

Orthologs for LRRC3-DT Gene

Evolution for LRRC3-DT Gene

ENSEMBL:
Gene Tree for LRRC3-DT (if available)
TreeFam:
Gene Tree for LRRC3-DT (if available)

No data available for Orthologs for LRRC3-DT Gene

Paralogs for LRRC3-DT Gene

No data available for Paralogs for LRRC3-DT Gene

Variants for LRRC3-DT Gene

Additional dbSNP identifiers (rs#s) for LRRC3-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for LRRC3-DT Gene

Variant ID Type Subtype PubMed ID
esv2723638 CNV deletion 23290073
esv33817 CNV loss 17666407
nsv1058359 CNV gain 25217958
nsv1122046 CNV deletion 24896259
nsv509800 CNV insertion 20534489
nsv587801 CNV loss 21841781
nsv834109 CNV loss 17160897
nsv953646 CNV deletion 24416366

Additional Variant Information for LRRC3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LRRC3-DT Gene

Disorders for LRRC3-DT Gene

MalaCards: The human disease database

(1) MalaCards diseases for LRRC3-DT Gene - From: DISEASES

Disorder Aliases PubMed IDs
renal cell carcinoma, papillary, 1
  • rccp1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LRRC3-DT

genes like me logo Genes that share disorders with LRRC3-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LRRC3-DT Gene

Publications for LRRC3-DT Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LRRC3-DT Gene

Products for LRRC3-DT Gene

Sources for LRRC3-DT Gene