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Aliases for LRP1-AS Gene

Subcategory (RNA class) for LRP1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LRP1-AS Gene

  • LRP1 Antisense RNA 2 3 5

External Ids for LRP1-AS Gene

Summaries for LRP1-AS Gene

GeneCards Summary for LRP1-AS Gene

LRP1-AS (LRP1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LRP1-AS include Alzheimer Disease.

Additional gene information for LRP1-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LRP1-AS Gene

Genomics for LRP1-AS Gene

GeneHancer (GH) Regulatory Elements for LRP1-AS Gene

Promoters and enhancers for LRP1-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J057145 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.7 -2733 10.1 ELF3 CEBPG RERE ZNF24 TFE3 SP1 HNF1A PPARG SP5 PRDM1 LRP1 NAB2 NEMP1 NABP2 DDIT3 STAT6 MBD6 LRP1-AS PIR32415 GC12P057183
GH12J057126 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.2 14181 13.9 CTCF ELF3 MNT CBFA2T2 POLR2A CEBPG TFE3 ZBTB7A TRIM24 SP1 LRP1 STAT6 HSPD1P4 NABP2 NAB2 DDIT3 MBD6 LRP1-AS
GH12J057165 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -19.2 -19159 2.7 MAFK FOSL2 CREB1 PRDM10 ZIC2 NFE2L2 RFX1 CTBP1 SMARCC1 ZNF316 ENSG00000224713 GC12P057183 PIR32415 LRP1-AS LRP1
GH12J057141 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.7 +4.8 4830 2.3 LRP1-AS LRP1 STAT6
GH12J057174 Enhancer 1.1 ENCODE dbSUPER 0.3 -28.4 -28383 3 CTCF ZNF121 GTF2F1 SP7 ELF1 IKZF1 ZBTB8A ZBTB33 ZNF600 PRDM10 TSPAN31 ENSG00000224713 GC12P057183 PIR32415 LRP1-AS LRP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRP1-AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for LRP1-AS Gene

Genomic Locations for LRP1-AS Gene
chr12:57,144,620-57,147,619
(GRCh38/hg38)
Size:
3,000 bases
Orientation:
Minus strand
chr12:57,538,403-57,541,402
(GRCh37/hg19)
Size:
3,000 bases
Orientation:
Minus strand

Genomic View for LRP1-AS Gene

Genes around LRP1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LRP1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRP1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRP1-AS Gene

Proteins for LRP1-AS Gene

Post-translational modifications for LRP1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRP1-AS Gene

Domains & Families for LRP1-AS Gene

Gene Families for LRP1-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LRP1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LRP1-AS Gene

Function for LRP1-AS Gene

Phenotypes From GWAS Catalog for LRP1-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRP1-AS Gene

Localization for LRP1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRP1-AS Gene

Pathways & Interactions for LRP1-AS Gene

PathCards logo

SuperPathways for LRP1-AS Gene

No Data Available

Interacting Proteins for LRP1-AS Gene

Gene Ontology (GO) - Biological Process for LRP1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LRP1-AS Gene

Drugs & Compounds for LRP1-AS Gene

No Compound Related Data Available

Transcripts for LRP1-AS Gene

mRNA/cDNA for LRP1-AS Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LRP1-AS Gene

No ASD Table

Relevant External Links for LRP1-AS Gene

GeneLoc Exon Structure for
LRP1-AS
ECgene alternative splicing isoforms for
LRP1-AS

Expression for LRP1-AS Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRP1-AS Gene

Orthologs for LRP1-AS Gene

Evolution for LRP1-AS Gene

ENSEMBL:
Gene Tree for LRP1-AS (if available)
TreeFam:
Gene Tree for LRP1-AS (if available)

No data available for Orthologs for LRP1-AS Gene

Paralogs for LRP1-AS Gene

No data available for Paralogs for LRP1-AS Gene

Variants for LRP1-AS Gene

Sequence variations from dbSNP and Humsavar for LRP1-AS Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000155472 -- 57,147,296(-) C/G intron_variant
rs1000471952 -- 57,146,760(-) C/G/T intron_variant
rs1000570746 -- 57,146,904(-) C/A intron_variant
rs1001279180 -- 57,147,360(-) G/A intron_variant
rs1001635431 -- 57,146,356(-) C/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant

Additional Variant Information for LRP1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRP1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LRP1-AS Gene

Disorders for LRP1-AS Gene

MalaCards: The human disease database

(1) MalaCards diseases for LRP1-AS Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
alzheimer disease
  • ad
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LRP1-AS

genes like me logo Genes that share disorders with LRP1-AS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LRP1-AS Gene

Publications for LRP1-AS Gene

  1. Antisense RNA controls LRP1 Sense transcript expression through interaction with a chromatin-associated protein, HMGB2. (PMID: 25937287) Yamanaka Y … Wahlestedt C (Cell reports 2015) 2 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LRP1-AS Gene

Sources for LRP1-AS Gene

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