Aliases for LRP1-AS Gene

Subcategory (RNA class) for LRP1-AS Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LRP1-AS Gene

  • LRP1 Antisense RNA 2 3 5
  • LRP1-AS 2 5 165
  • NONHSAG011412.2 91
  • HSALNG0091595 164

External Ids for LRP1-AS Gene

Summaries for LRP1-AS Gene

GeneCards Summary for LRP1-AS Gene

LRP1-AS (LRP1 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LRP1-AS include Alzheimer Disease.

Additional gene information for LRP1-AS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LRP1-AS Gene

Genomics for LRP1-AS Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LRP1-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J057145 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.4 -1383 10.1 GATAD2A PRDM10 TFE3 SOX13 NFKBIZ RCOR2 PRDM1 ZIC2 RBFOX2 RXRB LRP1-AS LRP1 NAB2 NEMP1 NABP2 DDIT3 STAT6 MBD6 NONHSAG011413.2 NXPH4
GH12J057126 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +15.6 15578 13.9 HNRNPL CREB1 GATAD2A TEAD4 PRDM10 REST TFE3 IKZF1 NFKBIZ KDM1A LRP1 STAT6 HSPD1P4 NABP2 NAB2 DDIT3 MBD6 LRP1-AS NXPH4
GH12J057165 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -17.8 -17831 2.8 CREB1 PRDM10 JUND RFX1 ZIC2 SP1 SMARCC1 CTBP1 BMI1 NFE2 NONHSAG011413.2 ENSG00000224713 LRP1-AS STAT6 LRP1 NXPH4
GH12J057157 Enhancer 0.6 ENCODE dbSUPER 0.4 -9.0 -9044 0.2 POLR2A ZNF623 SPI1 KDM1A LRP1-AS NONHSAG011413.2 LRP1 STAT6 NXPH4
GH12J057160 Enhancer 0.6 ENCODE dbSUPER 0.4 -13.0 -12964 2.2 RFX1 BMI1 RBM22 SPI1 NONHSAG011413.2 LRP1-AS STAT6 LRP1 NXPH4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRP1-AS on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LRP1-AS Gene

Genomic Locations for LRP1-AS Gene
chr12:57,144,474-57,148,969
(GRCh38/hg38)
Size:
4,496 bases
Orientation:
Minus strand
chr12:57,538,403-57,541,402
(GRCh37/hg19)
Size:
3,000 bases
Orientation:
Minus strand

Genomic View for LRP1-AS Gene

Genes around LRP1-AS on UCSC Golden Path with GeneCards custom track
LRP1-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LRP1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRP1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRP1-AS Gene

Proteins for LRP1-AS Gene

Post-translational modifications for LRP1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRP1-AS Gene

Domains & Families for LRP1-AS Gene

Gene Families for LRP1-AS Gene

genes like me logo Genes that share domains with LRP1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LRP1-AS Gene

Function for LRP1-AS Gene

Phenotypes From GWAS Catalog for LRP1-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRP1-AS Gene

Localization for LRP1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRP1-AS Gene

Pathways & Interactions for LRP1-AS Gene

PathCards logo

SuperPathways for LRP1-AS Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRP1-AS Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LRP1-AS Gene

Drugs & Compounds for LRP1-AS Gene

No Compound Related Data Available

Transcripts for LRP1-AS Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LRP1-AS Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000103821_9606 lncRNA 645 3

Ensembl: ENST00000555461 (view in UCSC) ,

LNCipedia: LRP1-AS:1,

NONCODE: NONHSAT028880.2,

URS00003DCB1E_9606 lncRNA 325 3

Ensembl: ENST00000554476 (view in UCSC) ,

LNCipedia: LRP1-AS:2,

NONCODE: NONHSAT028881.2,

URS00008E396F_9606 lncRNA 645 2

HGNC: 51694,

RefSeq: NR_131938,

URS00008E395A_9606 lncRNA 415 1

RefSeq: NR_131939,

URS0000E97D26_9606 lncRNA 2141 1

LncBook: HSALNT0189952,

LRP1-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LRP1-AS Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LRP1-AS Gene

No ASD Table

Relevant External Links for LRP1-AS Gene

GeneLoc Exon Structure for
LRP1-AS

Expression for LRP1-AS Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRP1-AS Gene

Orthologs for LRP1-AS Gene

Evolution for LRP1-AS Gene

ENSEMBL:
Gene Tree for LRP1-AS (if available)
TreeFam:
Gene Tree for LRP1-AS (if available)

No data available for Orthologs for LRP1-AS Gene

Paralogs for LRP1-AS Gene

No data available for Paralogs for LRP1-AS Gene

Variants for LRP1-AS Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LRP1-AS Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
732612 Benign: not provided 57,145,012(-) A/G NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
734666 Benign: not provided 57,145,066(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
775310 Benign: not provided 57,145,411(-) G/A SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for LRP1-AS Gene

Additional Variant Information for LRP1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRP1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LRP1-AS Gene

Disorders for LRP1-AS Gene

MalaCards: The human disease database

(1) MalaCards diseases for LRP1-AS Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
alzheimer disease
  • ad
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LRP1-AS

genes like me logo Genes that share disorders with LRP1-AS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LRP1-AS Gene

Publications for LRP1-AS Gene

  1. Antisense RNA controls LRP1 Sense transcript expression through interaction with a chromatin-associated protein, HMGB2. (PMID: 25937287) Yamanaka Y … Wahlestedt C (Cell reports 2015) 2 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for LRP1-AS Gene

Sources for LRP1-AS Gene