LRIG2-DT Gene (RNA Gene)

LRIG2 Divergent Transcript

GC01M113012
GIFtS:
10
See more...

Aliases for LRIG2-DT Gene

Subcategory (RNA class) for LRIG2-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LRIG2-DT Gene

  • LRIG2 Divergent Transcript 2 3 5
  • LRIG2-DT 2 5
  • NONHSAG002461.2 91
  • Lnc-SLC16A1-2 165
  • HSALNG0006157 164

External Ids for LRIG2-DT Gene

Summaries for LRIG2-DT Gene

GeneCards Summary for LRIG2-DT Gene

LRIG2-DT (LRIG2 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LRIG2-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LRIG2-DT Gene

Genomics for LRIG2-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LRIG2-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRIG2-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LRIG2-DT Gene

Genomic Locations for LRIG2-DT Gene
chr1:113,006,687-113,073,208
(GRCh38/hg38)
Size:
66,522 bases
Orientation:
Minus strand
chr1:113,554,309-113,615,727
(GRCh37/hg19)
Size:
61,419 bases
Orientation:
Minus strand

Genomic View for LRIG2-DT Gene

Genes around LRIG2-DT on UCSC Golden Path with GeneCards custom track
LRIG2-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LRIG2-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRIG2-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LRIG2-DT Gene

Proteins for LRIG2-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LRIG2-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRIG2-DT Gene

Domains & Families for LRIG2-DT Gene

Gene Families for LRIG2-DT Gene

HGNC:
genes like me logo Genes that share domains with LRIG2-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LRIG2-DT Gene

Function for LRIG2-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LRIG2-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRIG2-DT Gene

Localization for LRIG2-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRIG2-DT Gene

Pathways & Interactions for LRIG2-DT Gene

PathCards logo

SuperPathways for LRIG2-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRIG2-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LRIG2-DT Gene

Drugs & Compounds for LRIG2-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LRIG2-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LRIG2-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EFE7_9606 lncRNA 2456 3

HGNC: 54312,

RefSeq: NR_103777,

LNCipedia: lnc-SLC16A1-2:2,

URS0000EEE7E7_9606 lncRNA 2467 1

Ensembl: ENST00000421157 (view in UCSC) ,

URS000017A409_9606 lncRNA 2459 2

LNCipedia: lnc-SLC16A1-2:1,

NONCODE: NONHSAT005310.2,

URS00008BDADF_9606 lncRNA 2071 2

LncBook: HSALNT0012893,

LNCipedia: lnc-SLC16A1-2:8,

URS00008BE7BE_9606 lncRNA 1124 2

LNCipedia: lnc-SLC16A1-2:3,

NONCODE: NONHSAT005314.2,

LRIG2-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LRIG2-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LRIG2-DT Gene

No ASD Table

Relevant External Links for LRIG2-DT Gene

GeneLoc Exon Structure for
LRIG2-DT

Expression for LRIG2-DT Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LRIG2-DT

SOURCE GeneReport for Unigene cluster for LRIG2-DT Gene:

Hs.382067
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRIG2-DT Gene

Orthologs for LRIG2-DT Gene

Evolution for LRIG2-DT Gene

ENSEMBL:
Gene Tree for LRIG2-DT (if available)
TreeFam:
Gene Tree for LRIG2-DT (if available)

No data available for Orthologs for LRIG2-DT Gene

Paralogs for LRIG2-DT Gene

No data available for Paralogs for LRIG2-DT Gene

Variants for LRIG2-DT Gene

Additional dbSNP identifiers (rs#s) for LRIG2-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for LRIG2-DT Gene

Variant ID Type Subtype PubMed ID
esv1005491 CNV deletion 20482838
esv2150876 CNV deletion 18987734
esv24626 CNV loss 19812545
esv2474740 CNV loss 19546169
esv2497412 CNV deletion 19546169
esv2676074 CNV deletion 23128226
esv2716374 CNV deletion 23290073
esv2716385 CNV deletion 23290073
esv3539679 CNV deletion 23714750
esv3584026 CNV gain 25503493
esv3587229 CNV loss 21293372
esv3587230 CNV loss 21293372
esv3894045 CNV gain 25118596
esv990846 CNV deletion 20482838
nsv1122386 CNV deletion 24896259
nsv1137796 CNV deletion 24896259
nsv1151899 CNV deletion 26484159
nsv160886 CNV deletion 16902084
nsv435694 CNV deletion 17901297
nsv437002 CNV loss 16327808
nsv474036 CNV novel sequence insertion 20440878
nsv475058 CNV novel sequence insertion 20440878
nsv508537 CNV deletion 20534489
nsv509435 CNV insertion 20534489
nsv511711 CNV loss 21212237
nsv955110 CNV deletion 24416366
nsv999915 CNV gain 25217958

Additional Variant Information for LRIG2-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRIG2-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LRIG2-DT Gene

Disorders for LRIG2-DT Gene

Additional Disease Information for LRIG2-DT

Open Targets Platform

No disorders were found for LRIG2-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LRIG2-DT Gene

Publications for LRIG2-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LRIG2-DT Gene

Products for LRIG2-DT Gene

Sources for LRIG2-DT Gene