Aliases for LPP-AS2 Gene

Subcategory (RNA class) for LPP-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LPP-AS2 Gene

  • LPP Antisense RNA 2 2 3 5
  • LPP Antisense RNA 2 (Non-Protein Coding) 2 3
  • LPP-AS2 2 168
  • NONHSAG036948 92
  • HSALNG0031463 167
  • MYCLo-5 3
  • MYCLo-6 3

External Ids for LPP-AS2 Gene

Previous GeneCards Identifiers for LPP-AS2 Gene

  • GC03M187869

Summaries for LPP-AS2 Gene

GeneCards Summary for LPP-AS2 Gene

LPP-AS2 (LPP Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LPP-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LPP-AS2 Gene

Genomics for LPP-AS2 Gene

GeneHancer (GH) Regulatory Elements for LPP-AS2 Gene

Promoters and enhancers for LPP-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J188152 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -2.0 -1953 8.1 ZNF217 EP300 TCF12 POLR2G USF1 NCOR1 PHF8 TEAD4 ZFX ZIC2 LPP LPP-AS2 ENSG00000228804 JX046913 RF00017-4204
GH03J188160 Enhancer 0.4 dbSUPER 0.4 -7.1 -7094 1.6 ZBTB17 HLF ZFP3 RF00017-4204 LPP LPP-AS2
GH03J188148 Enhancer 0.4 Ensembl 0.4 +5.8 5797 0.6 ZNF316 MAFF MAFK JX046915 LPP-AS2 ENSG00000234238
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LPP-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LPP-AS2 Gene

Genomic Locations for LPP-AS2 Gene
chr3:188,148,244-188,154,098
(GRCh38/hg38)
Size:
5,855 bases
Orientation:
Minus strand
chr3:187,868,994-187,871,876
(GRCh37/hg19)
Size:
2,883 bases
Orientation:
Minus strand

Genomic View for LPP-AS2 Gene

Genes around LPP-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LPP-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LPP-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LPP-AS2 Gene

Proteins for LPP-AS2 Gene

Post-translational modifications for LPP-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LPP-AS2 Gene

Domains & Families for LPP-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LPP-AS2 Gene

Function for LPP-AS2 Gene

Phenotypes From GWAS Catalog for LPP-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LPP-AS2 Gene

Localization for LPP-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LPP-AS2 Gene

Pathways & Interactions for LPP-AS2 Gene

PathCards logo

SuperPathways for LPP-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LPP-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LPP-AS2 Gene

Drugs & Compounds for LPP-AS2 Gene

No Compound Related Data Available

Transcripts for LPP-AS2 Gene

mRNA/cDNA for LPP-AS2 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LncBook transcripts :
6 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LPP-AS2 Gene

No ASD Table

Relevant External Links for LPP-AS2 Gene

GeneLoc Exon Structure for
LPP-AS2

Expression for LPP-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LPP-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LPP-AS2

SOURCE GeneReport for Unigene cluster for LPP-AS2 Gene:

Hs.596639
genes like me logo Genes that share expression patterns with LPP-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LPP-AS2 Gene

Orthologs for LPP-AS2 Gene

Evolution for LPP-AS2 Gene

ENSEMBL:
Gene Tree for LPP-AS2 (if available)
TreeFam:
Gene Tree for LPP-AS2 (if available)

No data available for Orthologs for LPP-AS2 Gene

Paralogs for LPP-AS2 Gene

No data available for Paralogs for LPP-AS2 Gene

Variants for LPP-AS2 Gene

Additional dbSNP identifiers (rs#s) for LPP-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for LPP-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2751987 CNV gain 17911159
esv34193 CNV loss 18971310

Additional Variant Information for LPP-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LPP-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LPP-AS2 Gene

Disorders for LPP-AS2 Gene

Additional Disease Information for LPP-AS2

No disorders were found for LPP-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LPP-AS2 Gene

Publications for LPP-AS2 Gene

  1. Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis. (PMID: 25663692) Kim T … Croce CM (Journal of the National Cancer Institute 2015) 2 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54
  3. MYC-repressed long noncoding RNAs antagonize MYC-induced cell proliferation and cell cycle progression. (PMID: 26003165) Kim T … Croce CM (Oncotarget 2015) 3 54

Products for LPP-AS2 Gene

Sources for LPP-AS2 Gene