Aliases for LPP-AS1 Gene

Subcategory (RNA class) for LPP-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LPP-AS1 Gene

  • LPP Antisense RNA 1 2 3 5
  • LPP Antisense RNA 1 (Non-Protein Coding) 2 3
  • LPP-AS1 2 168
  • NONHSAG036950 92

External Ids for LPP-AS1 Gene

Previous GeneCards Identifiers for LPP-AS1 Gene

  • GC00U933541
  • GC03M188281

Summaries for LPP-AS1 Gene

GeneCards Summary for LPP-AS1 Gene

LPP-AS1 (LPP Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LPP-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LPP-AS1 Gene

Genomics for LPP-AS1 Gene

GeneHancer (GH) Regulatory Elements for LPP-AS1 Gene

Promoters and enhancers for LPP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J188567 Enhancer 0.5 Ensembl 500.7 +0.9 867 0.8 REST CUX1 CEBPB JUND GATA3 RXRA HNF4A HLF FOXA1 LPP-AS1 HSALNG0031468 LPP
GH03J188568 Enhancer 0.3 Ensembl 500.7 -0.7 -734 2 SMARCA4 LPP-AS1 lnc-BCL6-10 LPP
GH03J188578 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.4 -10.2 -10187 1.6 FOS REST NR2F2 STAT3 RAD21 RXRA MAX HNF4A BHLHE40 HNRNPK MIR28 lnc-BCL6-10 LPP-AS1 LPP
GH03J188546 Enhancer 1 Ensembl ENCODE 0.4 +21.5 21466 2 TCF12 JUND FOS TCF7 FOXA1 TEAD1 CTBP1 FOXA2 MAFF POLR2A LPP-AS1 HSALNG0031468 LPP
GH03J188552 Enhancer 0.7 Ensembl ENCODE 0.4 +12.3 12330 7.5 JUND FOS FOSL2 USF1 GATA3 PKNOX1 GATA2 BCL3 POLR2A NFE2L2 MIR28 LPP-AS1 HSALNG0031468 LPP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LPP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LPP-AS1 Gene

Genomic Locations for LPP-AS1 Gene
chr3:188,562,237-188,568,667
(GRCh38/hg38)
Size:
6,431 bases
Orientation:
Minus strand
chr3:188,280,026-188,286,454
(GRCh37/hg19)
Size:
6,429 bases
Orientation:
Minus strand

Genomic View for LPP-AS1 Gene

Genes around LPP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LPP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LPP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LPP-AS1 Gene

Proteins for LPP-AS1 Gene

Post-translational modifications for LPP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LPP-AS1 Gene

Domains & Families for LPP-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LPP-AS1 Gene

Function for LPP-AS1 Gene

Phenotypes From GWAS Catalog for LPP-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LPP-AS1 Gene

Localization for LPP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LPP-AS1 Gene

Pathways & Interactions for LPP-AS1 Gene

PathCards logo

SuperPathways for LPP-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LPP-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LPP-AS1 Gene

Drugs & Compounds for LPP-AS1 Gene

No Compound Related Data Available

Transcripts for LPP-AS1 Gene

mRNA/cDNA for LPP-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LPP-AS1 Gene

No ASD Table

Relevant External Links for LPP-AS1 Gene

GeneLoc Exon Structure for
LPP-AS1

Expression for LPP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LPP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for LPP-AS1 Gene

This gene is overexpressed in Testis (x43.6).
genes like me logo Genes that share expression patterns with LPP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LPP-AS1 Gene

Orthologs for LPP-AS1 Gene

Evolution for LPP-AS1 Gene

ENSEMBL:
Gene Tree for LPP-AS1 (if available)
TreeFam:
Gene Tree for LPP-AS1 (if available)

No data available for Orthologs for LPP-AS1 Gene

Paralogs for LPP-AS1 Gene

No data available for Paralogs for LPP-AS1 Gene

Variants for LPP-AS1 Gene

Additional dbSNP identifiers (rs#s) for LPP-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for LPP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv33400 CNV gain 17666407

Additional Variant Information for LPP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LPP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LPP-AS1 Gene

Disorders for LPP-AS1 Gene

Additional Disease Information for LPP-AS1

No disorders were found for LPP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LPP-AS1 Gene

Publications for LPP-AS1 Gene

No publications were found for LPP-AS1 Gene.

Products for LPP-AS1 Gene

Sources for LPP-AS1 Gene