Aliases for LPCAT2BP Gene

Aliases for LPCAT2BP Gene

  • Lysophosphatidylcholine Acyltransferase 2b, Pseudogene 2 3 5
  • LPCAT2BP 5

External Ids for LPCAT2BP Gene

Previous GeneCards Identifiers for LPCAT2BP Gene

  • GC01P092532
  • GC01P090652

Summaries for LPCAT2BP Gene

GeneCards Summary for LPCAT2BP Gene

LPCAT2BP (Lysophosphatidylcholine Acyltransferase 2b, Pseudogene) is a Pseudogene.

Additional gene information for LPCAT2BP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LPCAT2BP Gene

Genomics for LPCAT2BP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LPCAT2BP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J092070 Enhancer 0.2 Ensembl 0.7 +4.6 4595 0.2 LPCAT2BP SETSIP EPHX4
GH01J092049 Enhancer 0.2 Ensembl 0.4 -16.8 -16805 1.4 BTBD8 DIPK1A piR-35674-028 EPHX4 LPCAT2BP SETSIP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LPCAT2BP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LPCAT2BP Gene

Latest Assembly
chr1:92,066,306-92,067,839
(GRCh38/hg38)
Size:
1,534 bases
Orientation:
Plus strand

Previous Assembly
chr1:92,532,017-92,533,330
(GRCh37/hg19 by Entrez Gene)
Size:
1,314 bases
Orientation:
Plus strand

chr1:92,531,863-92,533,396
(GRCh37/hg19 by Ensembl)
Size:
1,534 bases
Orientation:
Plus strand

Genomic View for LPCAT2BP Gene

Genes around LPCAT2BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LPCAT2BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LPCAT2BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LPCAT2BP Gene

Proteins for LPCAT2BP Gene

Post-translational modifications for LPCAT2BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for LPCAT2BP Gene

Domains & Families for LPCAT2BP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LPCAT2BP Gene

Function for LPCAT2BP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LPCAT2BP Gene

Localization for LPCAT2BP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LPCAT2BP Gene

Pathways & Interactions for LPCAT2BP Gene

PathCards logo

SuperPathways for LPCAT2BP Gene

No Data Available

Gene Ontology (GO) - Biological Process for LPCAT2BP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LPCAT2BP Gene

Drugs & Compounds for LPCAT2BP Gene

No Compound Related Data Available

Transcripts for LPCAT2BP Gene

mRNA/cDNA for LPCAT2BP Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LPCAT2BP Gene

No ASD Table

Relevant External Links for LPCAT2BP Gene

GeneLoc Exon Structure for
LPCAT2BP

Expression for LPCAT2BP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LPCAT2BP Gene

mRNA differential expression in normal tissues according to GTEx for LPCAT2BP Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x10.9), Brain - Anterior cingulate cortex (BA24) (x9.3), Brain - Nucleus accumbens (basal ganglia) (x9.2), and Brain - Cortex (x8.9).
genes like me logo Genes that share expression patterns with LPCAT2BP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LPCAT2BP Gene

Orthologs for LPCAT2BP Gene

Evolution for LPCAT2BP Gene

ENSEMBL:
Gene Tree for LPCAT2BP (if available)
TreeFam:
Gene Tree for LPCAT2BP (if available)
Alliance of Genome Resources:
Additional Orthologs for LPCAT2BP

No data available for Orthologs for LPCAT2BP Gene

Paralogs for LPCAT2BP Gene

No data available for Paralogs for LPCAT2BP Gene

Variants for LPCAT2BP Gene

Additional Variant Information for LPCAT2BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LPCAT2BP
Leiden Open Variation Database (LOVD)
LPCAT2BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LPCAT2BP Gene

Disorders for LPCAT2BP Gene

No disorders were found for LPCAT2BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LPCAT2BP Gene

Publications for LPCAT2BP Gene

  1. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3

No data available for Mastermind for LPCAT2BP Gene

Products for LPCAT2BP Gene

Sources for LPCAT2BP Gene