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Aliases for LOC93429 Gene

Subcategory (RNA class) for LOC93429 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC93429 Gene

  • Uncharacterized LOC93429 3

External Ids for LOC93429 Gene

Previous GeneCards Identifiers for LOC93429 Gene

  • GC19P046204

Summaries for LOC93429 Gene

GeneCards Summary for LOC93429 Gene

LOC93429 (Uncharacterized LOC93429) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC93429 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC93429 Gene

Genomics for LOC93429 Gene

GeneHancer (GH) Regulatory Elements for LOC93429 Gene

Promoters and enhancers for LOC93429 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J046208 Promoter/Enhancer 1.2 Ensembl ENCODE 600.7 -0.8 -848 1 CTBP1 ZNF316 NFE2 PKNOX1 MAFG NR2C2 ZNF217 DPF2 MAFK IRF2 LOC93429 ENSG00000268460 IGFL2-AS1
GH19J046210 Enhancer 1 ENCODE dbSUPER 600.7 +1.4 1438 2.3 SP1 NFIB ELF1 EGR1 FOSL2 CREB1 ZNF544 ZNF300 TARDBP ATF1 LOC93429 ENSG00000268460 ZC3H4 ENSG00000269124 ERCC2 ENSG00000268810 CCDC61 PPP5C IGFL2-AS1 RPL12P41
GH19J046205 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 -3.9 -3850 2 ZNF680 CAVIN1 MNT MGA ZNF766 MAZ NFRKB ZFHX2 ZNF592 ZEB2 ENSG00000268460 IGFL1 IGFL2-AS1 RPL12P41 LOC93429
GH19J046213 Enhancer 0.5 Ensembl 0.7 +2.9 2859 0.2 PRDM1 CREB1 ZNF629 ATF2 ZNF660 ZNF398 ZBTB21 LOC93429 RPL12P41 ENSG00000268460 IGFL2-AS1
GH19J046218 Enhancer 0.7 ENCODE 0.4 +8.1 8097 0.2 ELF3 ZNF148 ZNF143 REST KMT2B NFE2 TGIF2 ZNF766 MAX MXI1 RPL12P41 LOC93429 IGFL2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC93429 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC93429 Gene

Genomic Locations for LOC93429 Gene
chr19:46,210,242-46,214,838
(GRCh38/hg38)
Size:
4,597 bases
Orientation:
Plus strand

Genomic View for LOC93429 Gene

Genes around LOC93429 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC93429 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC93429 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC93429 Gene

Proteins for LOC93429 Gene

Post-translational modifications for LOC93429 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC93429 Gene

Domains & Families for LOC93429 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC93429 Gene

Function for LOC93429 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC93429 Gene

Localization for LOC93429 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC93429 Gene

Pathways & Interactions for LOC93429 Gene

PathCards logo

SuperPathways for LOC93429 Gene

No Data Available

Interacting Proteins for LOC93429 Gene

Gene Ontology (GO) - Biological Process for LOC93429 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC93429 Gene

Drugs & Compounds for LOC93429 Gene

No Compound Related Data Available

Transcripts for LOC93429 Gene

mRNA/cDNA for LOC93429 Gene

(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC93429 Gene

No ASD Table

Relevant External Links for LOC93429 Gene

GeneLoc Exon Structure for
LOC93429

Expression for LOC93429 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC93429 Gene

Orthologs for LOC93429 Gene

No data available for Orthologs and Evolution for LOC93429 Gene

Paralogs for LOC93429 Gene

No data available for Paralogs for LOC93429 Gene

Variants for LOC93429 Gene

Sequence variations from dbSNP and Humsavar for LOC93429 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000056862 -- 46,211,173(+) C/T intron_variant
rs1000254686 -- 46,208,566(+) C/A/G upstream_transcript_variant
rs1000520203 -- 46,213,701(+) C/T intron_variant
rs1000690021 -- 46,208,780(+) C/T upstream_transcript_variant
rs1001018213 -- 46,208,724(+) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC93429 Gene

Disorders for LOC93429 Gene

No disorders were found for LOC93429 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC93429 Gene

Publications for LOC93429 Gene

  1. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J … Gingeras TR (Science (New York, N.Y.) 2005) 3 58
  2. Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. (PMID: 11441184) Dehal P … Stubbs L (Science (New York, N.Y.) 2001) 3 58

No data available for External Links for LOC93429 Gene

Products for LOC93429 Gene

Sources for LOC93429 Gene

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