Aliases for LOC93429 Gene

Subcategory (RNA class) for LOC93429 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC93429 Gene

  • Uncharacterized LOC93429 3
  • NONHSAG026073.2 91
  • Lnc-IGFL1-1 165

External Ids for LOC93429 Gene

Previous GeneCards Identifiers for LOC93429 Gene

  • GC19P046204

Summaries for LOC93429 Gene

GeneCards Summary for LOC93429 Gene

LOC93429 (Uncharacterized LOC93429) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC93429 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC93429 Gene

Genomics for LOC93429 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC93429 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J046208 Enhancer 1.2 Ensembl ENCODE dbSUPER 600.7 +1.8 1766 5.8 CREB1 TEAD4 ZNF629 TARDBP ZNF300 PRDM1 ATF7 SP1 EGR1 CTBP1 LOC93429 piR-31292-082 ENSG00000268460 ZC3H4 ENSG00000269124 ERCC2 ENSG00000268810 CCDC61 PPP5C IGFL2-AS1
GH19J046205 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 -2.5 -2542 2 TEAD4 MNT MGA ZNF766 NR3C1 NFRKB MYC MAZ ZFHX2 TFDP1 ENSG00000268460 IGFL1 IGFL2-AS1 RPL12P41 LOC93429 IGFL3 IGFL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC93429 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC93429 Gene

Genomic Locations for LOC93429 Gene
chr19:46,208,934-46,215,457
(GRCh38/hg38)
Size:
6,524 bases
Orientation:
Plus strand

Genomic View for LOC93429 Gene

Genes around LOC93429 on UCSC Golden Path with GeneCards custom track
LOC93429 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC93429 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC93429 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC93429 Gene

Proteins for LOC93429 Gene

Post-translational modifications for LOC93429 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC93429 Gene

Domains & Families for LOC93429 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC93429 Gene

Function for LOC93429 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC93429 Gene

Localization for LOC93429 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC93429 Gene

Pathways & Interactions for LOC93429 Gene

PathCards logo

SuperPathways for LOC93429 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC93429 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC93429 Gene

Drugs & Compounds for LOC93429 Gene

No Compound Related Data Available

Transcripts for LOC93429 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC93429 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B4A5_9606 lncRNA 1635 3

RefSeq: NR_027003,

LNCipedia: lnc-IGFL1-1:11,

NONCODE: NONHSAT066871.2,

URS00008C0261_9606 lncRNA 2694 2

LNCipedia: lnc-IGFL1-1:4,

NONCODE: NONHSAT066868.2,

URS00008C0072_9606 lncRNA 2368 2

LNCipedia: lnc-IGFL1-1:5,

NONCODE: NONHSAT066867.2,

URS00008BC28A_9606 lncRNA 2251 2

LNCipedia: lnc-IGFL1-1:10,

NONCODE: NONHSAT066870.2,

URS00008BBAF3_9606 lncRNA 1871 2

LNCipedia: lnc-IGFL1-1:9,

NONCODE: NONHSAT066869.2,

LOC93429 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC93429 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC93429 Gene

No ASD Table

Relevant External Links for LOC93429 Gene

GeneLoc Exon Structure for
LOC93429

Expression for LOC93429 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC93429

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC93429 Gene

Orthologs for LOC93429 Gene

No data available for Orthologs and Evolution for LOC93429 Gene

Paralogs for LOC93429 Gene

No data available for Paralogs for LOC93429 Gene

Variants for LOC93429 Gene

Additional dbSNP identifiers (rs#s) for LOC93429 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC93429 Gene

Disorders for LOC93429 Gene

No disorders were found for LOC93429 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC93429 Gene

Publications for LOC93429 Gene

  1. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J … Gingeras TR (Science (New York, N.Y.) 2005) 3
  2. Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. (PMID: 11441184) Dehal P … Stubbs L (Science (New York, N.Y.) 2001) 3

No data available for Mastermind for LOC93429 Gene

Products for LOC93429 Gene

Sources for LOC93429 Gene