LOC730101 Gene (RNA Gene)

Uncharacterized LOC730101

GC06P052664
GIFtS:
10
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Aliases for LOC730101 Gene

Subcategory (RNA class) for LOC730101 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC730101 Gene

  • Uncharacterized LOC730101 3
  • NONHSAG043936.2 91
  • Lnc-TMEM14A-1 165
  • HSALNG0050624 164

External Ids for LOC730101 Gene

Previous GeneCards Identifiers for LOC730101 Gene

  • GC06P052637
  • GC06U901417
  • GC06P052529

Summaries for LOC730101 Gene

GeneCards Summary for LOC730101 Gene

LOC730101 (Uncharacterized LOC730101) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC730101 include Osteogenic Sarcoma and Lung Cancer.

Additional gene information for LOC730101 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC730101 Gene

Genomics for LOC730101 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC730101 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J052663 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 600.7 +0.9 882 4.2 SP1 HNRNPL GATAD2A CTCF ZNF629 REST ZNF512 RFX1 IKZF1 ZNF692 ENSG00000216775 LOC730101 EFHC1 TRAM2 TRAM2-AS1 CILK1 TMEM14A lnc-GSTA2-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC730101 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC730101 gene promoter:
  • AP-1
  • AP-4
  • Evi-1
  • FOXO4
  • Lmo2
  • NF-1
  • POU3F2
  • POU3F2 (N-Oct-5a)
  • POU3F2 (N-Oct-5b)
  • SRY

Genomic Locations for LOC730101 Gene

Genomic Locations for LOC730101 Gene
chr6:52,664,401-52,669,153
(GRCh38/hg38)
Size:
4,753 bases
Orientation:
Plus strand
chr6:52,529,199-52,533,953
(GRCh37/hg19)
Size:
4,755 bases
Orientation:
Plus strand

Genomic View for LOC730101 Gene

Genes around LOC730101 on UCSC Golden Path with GeneCards custom track
LOC730101 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC730101 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC730101 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC730101 Gene

Proteins for LOC730101 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC730101 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC730101 Gene

Domains & Families for LOC730101 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC730101 Gene

Function for LOC730101 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC730101 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC730101 Gene

Localization for LOC730101 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC730101 Gene

Pathways & Interactions for LOC730101 Gene

PathCards logo

SuperPathways for LOC730101 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC730101 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC730101 Gene

Drugs & Compounds for LOC730101 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC730101 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC730101 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E02C_9606 lncRNA 3784 3

RefSeq: NR_024403,

LNCipedia: lnc-TMEM14A-1:3,

NONCODE: NONHSAT113138.2,

URS000075D84A_9606 lncRNA 3554 3

RefSeq: NR_024405,

LNCipedia: lnc-TMEM14A-1:1,

NONCODE: NONHSAT113139.2,

URS00008B71B6_9606 lncRNA 436 3

LncBook: HSALNT0107243,

LNCipedia: lnc-TMEM14A-1:5,

NONCODE: NONHSAT113141.2,

URS00008B2BF8_9606 lncRNA 2513 2

LNCipedia: lnc-TMEM14A-1:4,

NONCODE: NONHSAT113140.2,

URS0000D58014_9606 lncRNA 3771 1

LNCipedia: lnc-TMEM14A-1:7,

LOC730101 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC730101 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC730101 Gene

No ASD Table

Relevant External Links for LOC730101 Gene

GeneLoc Exon Structure for
LOC730101

Expression for LOC730101 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC730101 Gene

mRNA expression in normal human tissues for LOC730101 Gene
mRNA expression by BioGPS for LOC730101 GenemRNA expression by GTEx for LOC730101 Gene

mRNA differential expression in normal tissues according to GTEx for LOC730101 Gene

This gene is overexpressed in Liver (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC730101

SOURCE GeneReport for Unigene cluster for LOC730101 Gene:

Hs.7921
genes like me logo Genes that share expression patterns with LOC730101: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC730101 Gene

Orthologs for LOC730101 Gene

No data available for Orthologs and Evolution for LOC730101 Gene

Paralogs for LOC730101 Gene

No data available for Paralogs for LOC730101 Gene

Variants for LOC730101 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC730101 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC730101 Gene

Variant ID Type Subtype PubMed ID
nsv462945 CNV loss 19166990
nsv470818 CNV loss 18288195
nsv603106 CNV loss 21841781
nsv830663 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC730101 Gene

Disorders for LOC730101 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LOC730101 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
osteogenic sarcoma
  • osteosarcoma; osrc
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC730101: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC730101 Gene

Publications for LOC730101 Gene

  1. LncRNA LOC730101 promotes osteosarcoma cell survival under energy stress. (PMID: 29253564) Cheng G … Liu W (Biochemical and biophysical research communications 2018) 3
  2. High expression of long non-coding RNA LOC730101 correlates with distant metastasis and exhibits a poor prognosis in patients with osteosarcoma. (PMID: 30024599) Li SW … Wang YH (European review for medical and pharmacological sciences 2018) 3
  3. Highly expressed lncRNA LOC730101 promotes lung cancer cell growth through Wnt canonical pathway. (PMID: 28943432) Liu L … Cao W (Biochemical and biophysical research communications 2017) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC730101 Gene

Products for LOC730101 Gene

Sources for LOC730101 Gene