LOC729970 Gene (RNA Gene)

HCG2028352-Like

GC01P094927
GIFtS:
10

Aliases for LOC729970 Gene

Subcategory (RNA class) for LOC729970 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for LOC729970 Gene

  • HCG2028352-Like 3

External Ids for LOC729970 Gene

Previous GeneCards Identifiers for LOC729970 Gene

  • GC01P095199
  • GC01P095394

Summaries for LOC729970 Gene

GeneCards Summary for LOC729970 Gene

LOC729970 (HCG2028352-Like) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC729970 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729970 Gene

Genomics for LOC729970 Gene

GeneHancer (GH) Regulatory Elements for LOC729970 Gene

Promoters and enhancers for LOC729970 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729970 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC729970 gene promoter:
  • C/EBPalpha
  • ER-alpha
  • HNF-1A
  • HOXA9
  • HOXA9B
  • Meis-1
  • Meis-1b
  • Nkx2-5
  • p53
  • XBP-1

Genomic Locations for LOC729970 Gene

Genomic Locations for LOC729970 Gene
chr1:94,928,028-94,963,270
(GRCh38/hg38)
Size:
35,243 bases
Orientation:
Plus strand

Genomic View for LOC729970 Gene

Genes around LOC729970 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729970 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729970 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC729970 Gene

Proteins for LOC729970 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC729970 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729970 Gene

Domains & Families for LOC729970 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729970 Gene

Function for LOC729970 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC729970 Gene

Phenotypes for LOC729970 Gene

GenomeRNAi human phenotypes for LOC729970:
genes like me logo Genes that share phenotypes with LOC729970: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729970 Gene

Localization for LOC729970 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729970 Gene

Pathways & Interactions for LOC729970 Gene

PathCards logo

SuperPathways for LOC729970 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC729970 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC729970 Gene

Drugs & Compounds for LOC729970 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC729970 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC729970 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729970 Gene

No ASD Table

Relevant External Links for LOC729970 Gene

GeneLoc Exon Structure for
LOC729970

Expression for LOC729970 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC729970 Gene

mRNA expression in normal human tissues for LOC729970 Gene
mRNA expression by GTEx for LOC729970 Gene

SOURCE GeneReport for Unigene cluster for LOC729970 Gene:

Hs.297988
genes like me logo Genes that share expression patterns with LOC729970: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729970 Gene

Orthologs for LOC729970 Gene

No data available for Orthologs and Evolution for LOC729970 Gene

Paralogs for LOC729970 Gene

No data available for Paralogs for LOC729970 Gene

Variants for LOC729970 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC729970 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000129615 -- 94,959,862(+) T/C intron_variant
rs1000159063 -- 94,941,538(+) A/G intron_variant
rs1000273521 -- 94,941,238(+) A/T intron_variant
rs1000342721 -- 94,948,436(+) C/T intron_variant
rs1000428391 -- 94,960,470(+) A/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC729970 Gene

Disorders for LOC729970 Gene

No disorders were found for LOC729970 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729970 Gene

Publications for LOC729970 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56

No data available for External Links for LOC729970 Gene

Products for LOC729970 Gene

Sources for LOC729970 Gene