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Aliases for LOC729970 Gene

Subcategory (RNA class) for LOC729970 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC729970 Gene

  • HCG2028352-Like 3
  • AC105942.1 5

External Ids for LOC729970 Gene

Previous GeneCards Identifiers for LOC729970 Gene

  • GC01P095199
  • GC01P095394

Summaries for LOC729970 Gene

GeneCards Summary for LOC729970 Gene

LOC729970 (HCG2028352-Like) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC729970 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC729970 Gene

Genomics for LOC729970 Gene

GeneHancer (GH) Regulatory Elements for LOC729970 Gene

Promoters and enhancers for LOC729970 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I094921 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 565.9 -1.7 -1725 8.3 FOXA2 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF143 SP3 NFYC MXD4 LOC729970 CNN3 LOC105378862 RWDD3 LOC101928098 ENSG00000228852 GC01M094916 GC01M094915 GC01M094914 GC01P094917
GH01I094978 Enhancer 1 Ensembl ENCODE dbSUPER 17.4 +53.9 53894 5.3 GATAD2A SAP130 HLF ZFP64 JUND POLR2A FOS RCOR1 MAFK LOC729970 CNN3 LOC101928098 ALG14 TMEM56 ENSG00000228852 GC01M094925 GC01M094924
GH01I094862 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -62.6 -62598 5.8 SAP130 JUN ZNF384 TEAD3 GATA3 ZNF213 RBAK POLR2A RCOR1 FOSL2 RWDD3 ENSG00000228852 CNN3 LOC729970 LOC101928098 SLC44A3 LOC101928118 SLC44A3-AS1 GC01P094917
GH01I094901 Enhancer 0.7 dbSUPER 19.9 -24.5 -24522 3 MEIS2 PKNOX1 ZNF189 CEBPG ZNF518A OSR2 ATF4 ZNF366 KLF16 PATZ1 LOC729970 CNN3 SLC44A3-AS1 SLC44A3 LOC101928098 GC01P094917
GH01I094949 Enhancer 1 Ensembl ENCODE 12.1 +22.7 22684 1 FOXA2 FEZF1 RAD21 YY1 RCOR1 FOS KLF13 HMG20B RXRA CEBPB CNN3 LOC729970 GC01M094924 GC01M094925
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC729970 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC729970 gene promoter:

Genomic Locations for LOC729970 Gene

Genomic Locations for LOC729970 Gene
chr1:94,927,566-94,963,270
(GRCh38/hg38)
Size:
35,705 bases
Orientation:
Plus strand
chr1:95,393,122-95,428,826
(GRCh37/hg19)

Genomic View for LOC729970 Gene

Genes around LOC729970 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729970 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729970 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729970 Gene

Proteins for LOC729970 Gene

Post-translational modifications for LOC729970 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729970 Gene

Domains & Families for LOC729970 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC729970 Gene

Function for LOC729970 Gene

Phenotypes From GWAS Catalog for LOC729970 Gene

Phenotypes for LOC729970 Gene

GenomeRNAi human phenotypes for LOC729970:
genes like me logo Genes that share phenotypes with LOC729970: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729970 Gene

Localization for LOC729970 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729970 Gene

Pathways & Interactions for LOC729970 Gene

SuperPathways for LOC729970 Gene

No Data Available

Interacting Proteins for LOC729970 Gene

Gene Ontology (GO) - Biological Process for LOC729970 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC729970 Gene

Drugs & Compounds for LOC729970 Gene

No Compound Related Data Available

Transcripts for LOC729970 Gene

mRNA/cDNA for LOC729970 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC729970 Gene

HCG2028352-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729970 Gene

No ASD Table

Relevant External Links for LOC729970 Gene

GeneLoc Exon Structure for
LOC729970

Expression for LOC729970 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC729970 Gene

SOURCE GeneReport for Unigene cluster for LOC729970 Gene:

Hs.297988
genes like me logo Genes that share expression patterns with LOC729970: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729970 Gene

Orthologs for LOC729970 Gene

Evolution for LOC729970 Gene

ENSEMBL:
Gene Tree for LOC729970 (if available)
TreeFam:
Gene Tree for LOC729970 (if available)

No data available for Orthologs for LOC729970 Gene

Paralogs for LOC729970 Gene

No data available for Paralogs for LOC729970 Gene

Variants for LOC729970 Gene

Sequence variations from dbSNP and Humsavar for LOC729970 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000129615 -- 94,959,862(+) T/C intron_variant
rs1000159063 -- 94,941,538(+) A/G intron_variant
rs1000273521 -- 94,941,238(+) A/T intron_variant
rs1000342721 -- 94,948,436(+) C/T intron_variant
rs1000428391 -- 94,960,470(+) A/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC729970 Gene

Disorders for LOC729970 Gene

Additional Disease Information for LOC729970

No disorders were found for LOC729970 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC729970 Gene

Publications for LOC729970 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LOC729970 Gene

Sources for LOC729970 Gene

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