Aliases for LOC729968 Gene

Data sources for LOC729968 Gene:

RNA type for LOC729968 Gene

lncRNA

Aliases for LOC729968 Gene

External Ids for LOC729968 Gene

Previous GeneCards Identifiers for LOC729968 Gene

  • GC02M228301
  • GC02M228191
  • GC02U902011

Summaries for LOC729968 Gene

GeneCards Summary for LOC729968 Gene

LOC729968 (Spore Coat Protein SP96) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC729968 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729968 Gene

Genomics for LOC729968 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC729968 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J227616 Enhancer 0.2 Ensembl 250.7 +1.9 1855 1.2 ENSG00000236116 LOC729968 SCYGR3 SCYGR4 HSALNG0022759-001 C2orf83
GH02J227620 Enhancer 0.2 Ensembl 250.7 -1.6 -1646 0.2 LOC729968 CCL20 SCYGR4 HSALNG0022759-001 C2orf83
GH02J227644 Enhancer 0.9 Ensembl 0.3 -25.5 -25546 0.4 CEBPA CHD4 FOXA1 ZFP64 HOMEZ THAP11 FOXA2 KDM6A MAFF SMAD4 C2orf83 SCYGR4 LOC729968 HSALNG0022759-001
GH02J227623 Enhancer 0.3 Ensembl 0.7 -4.7 -4746 1.2 JUND FOS CCL20 LOC729968 SCYGR4 HSALNG0022759-001 C2orf83
GH02J227626 Enhancer 0.4 FANTOM5 0.4 -8.1 -8107 0.2 ATF2 CREB1 ATF7 CCL20 DAW1 LOC729968 SCYGR4 HSALNG0022759-001 C2orf83
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729968 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC729968 Gene

Latest Assembly
chr2:227,616,991-227,618,655
(GRCh38/hg38)
Size:
1,665 bases
Orientation:
Minus strand

Previous Assembly
chr2:228,481,707-228,483,371
(GRCh37/hg19 by Entrez Gene)
Size:
1,665 bases
Orientation:
Minus strand

Genomic View for LOC729968 Gene

Genes around LOC729968 on UCSC Golden Path with GeneCards custom track
LOC729968 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC729968 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729968 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729968 Gene

Proteins for LOC729968 Gene

Post-translational modifications for LOC729968 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729968 Gene

Domains & Families for LOC729968 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729968 Gene

Function for LOC729968 Gene

Phenotypes From GWAS Catalog for LOC729968 Gene

genes like me logo Genes that share phenotypes with LOC729968: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729968 Gene

Localization for LOC729968 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729968 Gene

Pathways & Interactions for LOC729968 Gene

PathCards logo

SuperPathways for LOC729968 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC729968 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC729968 Gene

Drugs & Compounds for LOC729968 Gene

No Compound Related Data Available

Transcripts for LOC729968 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC729968 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC43E9_9606 lncRNA 1412 1

RefSeq: NR_149019,

URS0001BD6851_9606 lncRNA 540 1

LncBook: HSALNT0048285,

URS0001BDD8D6_9606 lncRNA 540 1

LncBook: HSALNT0048286,

LOC729968 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC729968 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729968 Gene

No ASD Table

Relevant External Links for LOC729968 Gene

GeneLoc Exon Structure for
LOC729968

Expression for LOC729968 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC729968 Gene

mRNA expression in normal human tissues for LOC729968 Gene

SOURCE GeneReport for Unigene cluster for LOC729968 Gene:

Hs.689550
genes like me logo Genes that share expression patterns with LOC729968: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729968 Gene

Orthologs for LOC729968 Gene

No data available for Orthologs and Evolution for LOC729968 Gene

Paralogs for LOC729968 Gene

No data available for Paralogs for LOC729968 Gene

Variants for LOC729968 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC729968 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC729968 Gene

Disorders for LOC729968 Gene

No disorders were found for LOC729968 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729968 Gene

Publications for LOC729968 Gene

  1. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy RB … Poland GA (Human genetics 2012) 3

No data available for Mastermind for LOC729968 Gene

Products for LOC729968 Gene

Sources for LOC729968 Gene