Aliases for LOC729966 Gene

Subcategory (RNA class) for LOC729966 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for LOC729966 Gene

  • Uncharacterized LOC729966 3
  • Uncharacterized Protein 13
  • Novel Protein 5
  • AC008397.1 5
  • Lnc-IQCN-1 170

External Ids for LOC729966 Gene

Previous GeneCards Identifiers for LOC729966 Gene

  • GC19M018222
  • GC19M018360
  • GC19U901462

Summaries for LOC729966 Gene

GeneCards Summary for LOC729966 Gene

LOC729966 (Uncharacterized LOC729966) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are DAG and IP3 signaling and Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling.

Additional gene information for LOC729966 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729966 Gene

Genomics for LOC729966 Gene

GeneHancer (GH) Regulatory Elements for LOC729966 Gene

Promoters and enhancers for LOC729966 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J018253 Promoter/Enhancer 1.1 FANTOM5 Ensembl ENCODE 750.6 +1.0 954 2.6 CTCF CEBPG ZEB2 CTBP1 POLR2A CEBPB SIN3A ZMYM3 ZBTB33 KDM1A ENSG00000285188 LOC729966 PDE4C B3GNT3
GH19J018251 Enhancer 0.9 Ensembl ENCODE 0.6 +3.4 3435 0.6 CTCF CC2D1A RAD21 ZKSCAN8 ARID2 REST TRIM22 ZNF143 PATZ1 RCOR1 PDE4C IQCN ENSG00000285188 LOC729966
GH19J018247 Enhancer 0.6 Ensembl 0.4 +7.1 7141 1 TEAD4 ZNF148 CBFA2T2 NCOR1 BCOR NFIC ZFHX2 TCF12 KDM1A TAL1 PDE4C IQCN LSM4 MPV17L2 ENSG00000285188 LOC729966
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729966 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC729966 gene promoter:
  • AML1a
  • Arnt
  • c-Myc
  • E47
  • Egr-2
  • GATA-1
  • GATA-2
  • GATA-3
  • Lmo2
  • Max

Genomic Locations for LOC729966 Gene

Genomic Locations for LOC729966 Gene
chr19:18,249,950-18,255,419
(GRCh38/hg38)
Size:
5,470 bases
Orientation:
Minus strand
chr19:18,360,760-18,366,229
(GRCh37/hg19)
Size:
5,470 bases
Orientation:
Minus strand

Genomic View for LOC729966 Gene

Genes around LOC729966 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729966 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729966 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729966 Gene

Proteins for LOC729966 Gene

  • Protein details for LOC729966 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A2R8Y7Y5-A0A2R8Y7Y5_HUMAN
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A2R8Y7Y5

    Protein attributes for LOC729966 Gene

    Size:
    234 amino acids
    Molecular mass:
    24738 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC729966 Gene

Post-translational modifications for LOC729966 Gene

No Post-translational modifications

Other Protein References for LOC729966 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for LOC729966 Gene

Domains & Families for LOC729966 Gene

Protein Domains for LOC729966 Gene

ProtoNet:
genes like me logo Genes that share domains with LOC729966: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729966 Gene

Function for LOC729966 Gene

Phenotypes From GWAS Catalog for LOC729966 Gene

Phenotypes for LOC729966 Gene

genes like me logo Genes that share phenotypes with LOC729966: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729966 Gene

Localization for LOC729966 Gene

Gene Ontology (GO) - Cellular Components for LOC729966 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with LOC729966: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LOC729966 Gene

Pathways & Interactions for LOC729966 Gene

genes like me logo Genes that share pathways with LOC729966: view

Pathways by source for LOC729966 Gene

Gene Ontology (GO) - Biological Process for LOC729966 Gene

None

No data available for SIGNOR curated interactions for LOC729966 Gene

Drugs & Compounds for LOC729966 Gene

No Compound Related Data Available

Transcripts for LOC729966 Gene

mRNA/cDNA for LOC729966 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729966 Gene

No ASD Table

Relevant External Links for LOC729966 Gene

GeneLoc Exon Structure for
LOC729966

Expression for LOC729966 Gene

SOURCE GeneReport for Unigene cluster for LOC729966 Gene:

Hs.710873
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729966 Gene

Orthologs for LOC729966 Gene

Evolution for LOC729966 Gene

ENSEMBL:
Gene Tree for LOC729966 (if available)
TreeFam:
Gene Tree for LOC729966 (if available)

No data available for Orthologs for LOC729966 Gene

Paralogs for LOC729966 Gene

No data available for Paralogs for LOC729966 Gene

Variants for LOC729966 Gene

Sequence variations from dbSNP and Humsavar for LOC729966 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000231320 -- 18,249,768(-) T/C downstream_transcript_variant
rs1000249834 -- 18,253,562(-) /C/CAC intron_variant
rs1001346054 -- 18,254,198(-) G/A intron_variant
rs1001450092 -- 18,254,228(-) C/T intron_variant
rs1001552453 -- 18,255,317(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC729966 Gene

Variant ID Type Subtype PubMed ID
nsv470131 CNV loss 18288195
nsv833775 CNV loss 17160897
nsv952420 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC729966 Gene

Disorders for LOC729966 Gene

No disorders were found for LOC729966 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729966 Gene

Publications for LOC729966 Gene

  1. Overexpression of long non-coding RNA NR_036575.1 contributes to the proliferation and migration of papillary thyroid cancer. (PMID: 27510368) Sun W … Zhang H (Medical oncology (Northwood, London, England) 2016) 3 56
  2. Genome-wide analysis of long noncoding RNA expression profile in papillary thyroid carcinoma. (PMID: 26003293) Lan X … Zhang D (Gene 2015) 3 56
  3. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 13 56
  4. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56

No data available for External Links for LOC729966 Gene

Products for LOC729966 Gene

Sources for LOC729966 Gene