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Aliases for LOC729945 Gene

Subcategory (RNA class) for LOC729945 Gene

lncRNA

Aliases for LOC729945 Gene

  • Rho GTPase Activating Protein 21 Pseudogene 3

External Ids for LOC729945 Gene

ORGUL Members for LOC729945 Gene

Previous GeneCards Identifiers for LOC729945 Gene

  • GC16M010841
  • GC16M010933

Summaries for LOC729945 Gene

GeneCards Summary for LOC729945 Gene

LOC729945 (Rho GTPase Activating Protein 21 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC729945 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC729945 Gene

Genomics for LOC729945 Gene

GeneHancer (GH) Regulatory Elements for LOC729945 Gene

Promoters and enhancers for LOC729945 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J010842 Enhancer 0.9 FANTOM5 ENCODE 600.7 -1.9 -1890 1.1 ZNF687 RELA MLLT1 IKZF1 IKZF2 DPF2 EED RUNX3 BCLAF1 ZNF592 ENSG00000262488 LOC729945 CIITA TVP23A SOCS1 NUBP1 LOC105371080 GC16P010485
GH16J010862 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.3 -21.1 -21069 0.4 IKZF1 CEBPB JUN JUND MAX ZBTB17 EP300 STAT3 TCF7L2 HNF4A CIITA NUBP1 LOC729945 LOC105371080 GC16P010485
GH16J010859 Enhancer 1 FANTOM5 Ensembl 0.4 -18.3 -18315 1.1 IKZF1 CREB1 YBX1 NFRKB ATF7 HES1 MNT ZNF207 FOXA1 EHMT2 EMP2 CIITA LOC729945 LOC105371080 GC16P010485
GH16J010866 Promoter/Enhancer 0.7 EPDnew dbSUPER 0.3 -24.6 -24634 0.1 CIITA LOC729945 LOC105371080 ENSG00000262151 GC16P010485
GH16J010846 Enhancer 0.4 ENCODE 0.4 -5.3 -5306 0.2 RNF2 BMI1 TVP23A LOC729945 CIITA LOC105371080 GC16P010485
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729945 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC729945 Gene

Genomic Locations for LOC729945 Gene
chr16:10,839,598-10,841,553
(GRCh38/hg38)
Size:
1,956 bases
Orientation:
Minus strand
chr16:10,933,455-10,935,410
(GRCh37/hg19)
Size:
1,956 bases
Orientation:
Minus strand

Genomic View for LOC729945 Gene

Genes around LOC729945 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729945 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729945 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729945 Gene

Proteins for LOC729945 Gene

Post-translational modifications for LOC729945 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729945 Gene

Domains & Families for LOC729945 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC729945 Gene

Function for LOC729945 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729945 Gene

Localization for LOC729945 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729945 Gene

Pathways & Interactions for LOC729945 Gene

PathCards logo

SuperPathways for LOC729945 Gene

No Data Available

Interacting Proteins for LOC729945 Gene

Gene Ontology (GO) - Biological Process for LOC729945 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC729945 Gene

Drugs & Compounds for LOC729945 Gene

No Compound Related Data Available

Transcripts for LOC729945 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729945 Gene

No ASD Table

Relevant External Links for LOC729945 Gene

GeneLoc Exon Structure for
LOC729945

No data available for mRNA/cDNA for LOC729945 Gene

Expression for LOC729945 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC729945 Gene

mRNA differential expression in normal tissues according to GTEx for LOC729945 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x15.0) and Spleen (x11.2).
genes like me logo Genes that share expression patterns with LOC729945: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729945 Gene

Orthologs for LOC729945 Gene

No data available for Orthologs and Evolution for LOC729945 Gene

Paralogs for LOC729945 Gene

No data available for Paralogs for LOC729945 Gene

Variants for LOC729945 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC729945 Gene

Disorders for LOC729945 Gene

No disorders were found for LOC729945 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729945 Gene

Publications for LOC729945 Gene

No publications were found for LOC729945 Gene.

No data available for External Links for LOC729945 Gene

Products for LOC729945 Gene

Sources for LOC729945 Gene

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