Aliases for LOC729815 Gene

Subcategory (RNA class) for LOC729815 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC729815 Gene

  • Uncharacterized LOC729815 3
  • NONHSAG006332.2 91
  • HSALNG0079145 164
  • Lnc-SFTPA2-1 165

External Ids for LOC729815 Gene

Previous GeneCards Identifiers for LOC729815 Gene

  • GC10M080936
  • GC10M081266
  • GC10M079503

Summaries for LOC729815 Gene

GeneCards Summary for LOC729815 Gene

LOC729815 (Uncharacterized LOC729815) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC729815 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729815 Gene

Genomics for LOC729815 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC729815 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J079510 Enhancer 0.2 Ensembl 600.7 +1.4 1432 3.8 ENSG00000235705 LOC729815 piR-30203-001 piR-47386-001 ENSG00000224886 NUTM2B-AS1 EIF5AL1 lnc-EIF5AL1-2 ZCCHC24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729815 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC729815 gene promoter:
  • AML1a
  • c-Myb
  • C/EBPbeta
  • MRF-2
  • NF-kappaB1
  • Pax-5
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c

Genomic Locations for LOC729815 Gene

Genomic Locations for LOC729815 Gene
chr10:79,506,370-79,511,133
(GRCh38/hg38)
Size:
4,764 bases
Orientation:
Minus strand
chr10:81,266,126-81,270,678
(GRCh37/hg19)
Size:
4,553 bases
Orientation:
Minus strand

Genomic View for LOC729815 Gene

Genes around LOC729815 on UCSC Golden Path with GeneCards custom track
LOC729815 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC729815 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729815 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729815 Gene

Proteins for LOC729815 Gene

Post-translational modifications for LOC729815 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729815 Gene

Domains & Families for LOC729815 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729815 Gene

Function for LOC729815 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729815 Gene

Localization for LOC729815 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729815 Gene

Pathways & Interactions for LOC729815 Gene

PathCards logo

SuperPathways for LOC729815 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC729815 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC729815 Gene

Drugs & Compounds for LOC729815 Gene

No Compound Related Data Available

Transcripts for LOC729815 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC729815 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A7678D_9606 lncRNA 1654 2

RefSeq: NR_136624,

LNCipedia: lnc-SFTPA2-1:7,

URS0000A76CAE_9606 lncRNA 663 2

RefSeq: NR_136625,

LNCipedia: lnc-SFTPA2-1:6,

URS00008BD4F0_9606 lncRNA 2347 3

LncBook: HSALNT0165098,

LNCipedia: lnc-SFTPA2-1:5,

NONCODE: NONHSAT015113.2,

URS00008C1710_9606 lncRNA 1594 2

LNCipedia: lnc-SFTPA2-1:3,

NONCODE: NONHSAT015115.2,

URS00008B86AF_9606 lncRNA 947 2

LNCipedia: lnc-SFTPA2-1:2,

NONCODE: NONHSAT015118.2,

LOC729815 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC729815 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729815 Gene

No ASD Table

Relevant External Links for LOC729815 Gene

GeneLoc Exon Structure for
LOC729815

Expression for LOC729815 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC729815 Gene

mRNA differential expression in normal tissues according to GTEx for LOC729815 Gene

This gene is overexpressed in Testis (x47.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC729815

SOURCE GeneReport for Unigene cluster for LOC729815 Gene:

Hs.646712
genes like me logo Genes that share expression patterns with LOC729815: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729815 Gene

Orthologs for LOC729815 Gene

No data available for Orthologs and Evolution for LOC729815 Gene

Paralogs for LOC729815 Gene

No data available for Paralogs for LOC729815 Gene

Variants for LOC729815 Gene

Additional dbSNP identifiers (rs#s) for LOC729815 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC729815 Gene

Disorders for LOC729815 Gene

No disorders were found for LOC729815 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729815 Gene

Publications for LOC729815 Gene

No publications were found for LOC729815 Gene.

No data available for Mastermind for LOC729815 Gene

Products for LOC729815 Gene

Sources for LOC729815 Gene