Aliases for LOC729732 Gene

Data sources for LOC729732 Gene:

RNA type for LOC729732 Gene

ncRNA

Aliases for LOC729732 Gene

External Ids for LOC729732 Gene

Previous GeneCards Identifiers for LOC729732 Gene

  • GC08M012560
  • GC08M012496
  • GC08M012394
  • GC08M012452
  • GC08M012537

Summaries for LOC729732 Gene

GeneCards Summary for LOC729732 Gene

LOC729732 (Uncharacterized LOC729732) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC729732 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729732 Gene

Genomics for LOC729732 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC729732 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729732 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC729732 gene promoter:
  • AREB6
  • En-1
  • IRF-2
  • Nkx3-1
  • Nkx3-1 v1
  • Nkx3-1 v2
  • Nkx3-1 v3
  • Nkx3-1 v4
  • TBP
  • TFIID

Genomic Locations for LOC729732 Gene

Latest Assembly
chr8:12,467,692-12,665,630
(GRCh38/hg38)
Size:
197,939 bases
Orientation:
Minus strand

Previous Assembly
chr8:12,394,588-12,523,120
(GRCh37/hg19 by Entrez Gene)
Size:
128,533 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):5,732,453-5,861,307 (-)

Genomic View for LOC729732 Gene

Genes around LOC729732 on UCSC Golden Path with GeneCards custom track
LOC729732 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC729732 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729732 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729732 Gene

Proteins for LOC729732 Gene

Post-translational modifications for LOC729732 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729732 Gene

Domains & Families for LOC729732 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729732 Gene

Function for LOC729732 Gene

genes like me logo Genes that share phenotypes with LOC729732: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729732 Gene

Localization for LOC729732 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729732 Gene

Pathways & Interactions for LOC729732 Gene

PathCards logo

SuperPathways for LOC729732 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC729732 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC729732 Gene

Drugs & Compounds for LOC729732 Gene

No Compound Related Data Available

Transcripts for LOC729732 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC729732 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075CA68_9606 lncRNA 3991 3

RefSeq: NR_047662,

LNCipedia: lnc-FAM86B2-58:3,

NONCODE: NONHSAT125160.2,

URS0000A911FC_9606 lncRNA 1014 3

Ensembl: ENST00000636622 (view in UCSC) ,

LncBook: HSALNT0133234,

LNCipedia: lnc-FAM86B2-58:11,

URS0000D59A9E_9606 lncRNA 5624 2

Ensembl: ENST00000641839 (view in UCSC) ,

LNCipedia: lnc-FAM86B2-58:9,

URS0000D5E0E1_9606 lncRNA 4514 2

Ensembl: ENST00000641618 (view in UCSC) ,

LNCipedia: lnc-FAM86B2-58:10,

URS00008C0A25_9606 lncRNA 3968 2

Ensembl: ENST00000635775 (view in UCSC) ,

LNCipedia: lnc-FAM86B2-58:4,

LOC729732 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC729732 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729732 Gene

No ASD Table

Relevant External Links for LOC729732 Gene

GeneLoc Exon Structure for
LOC729732

Expression for LOC729732 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC729732 Gene

mRNA expression in normal human tissues for LOC729732 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC729732

SOURCE GeneReport for Unigene cluster for LOC729732 Gene:

Hs.696467
genes like me logo Genes that share expression patterns with LOC729732: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729732 Gene

Orthologs for LOC729732 Gene

Evolution for LOC729732 Gene

ENSEMBL:
Gene Tree for LOC729732 (if available)
TreeFam:
Gene Tree for LOC729732 (if available)

No data available for Orthologs for LOC729732 Gene

Paralogs for LOC729732 Gene

No data available for Paralogs for LOC729732 Gene

Variants for LOC729732 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC729732 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC729732 Gene

Variant ID Type Subtype PubMed ID
dgv1270e199 CNV deletion 23128226
dgv1271e199 CNV deletion 23128226
dgv1377e214 CNV gain 21293372
dgv154e203 CNV gain+loss 21179565
dgv244e55 CNV gain 17911159
dgv245e55 CNV gain 17911159
dgv246e55 CNV gain 17911159
dgv264n111 CNV duplication 26073780
dgv3776n106 CNV duplication 24896259
dgv3777n106 CNV deletion 24896259
dgv4087e59 CNV duplication 20981092
dgv4088e59 CNV duplication 20981092
dgv4089e59 CNV duplication 20981092
dgv4090e59 CNV duplication 20981092
dgv7015n100 CNV gain 25217958
dgv7016n100 CNV gain 25217958
dgv7018n100 CNV gain+loss 25217958
dgv7019n100 CNV gain 25217958
dgv7021n100 CNV loss 25217958
dgv7025n100 CNV gain 25217958
dgv7026n100 CNV gain+loss 25217958
dgv7032n100 CNV gain 25217958
dgv7033n100 CNV gain 25217958
dgv7036n100 CNV gain 25217958
dgv7037n100 CNV loss 25217958
dgv7040n100 CNV gain 25217958
dgv7053n100 CNV loss 25217958
dgv7054n100 CNV gain 25217958
dgv7055n100 CNV gain+loss 25217958
dgv7056n100 CNV gain 25217958
dgv7060n100 CNV loss 25217958
dgv7064n100 CNV loss 25217958
dgv7065n100 CNV gain+loss 25217958
dgv7070n100 CNV gain+loss 25217958
dgv7071n100 CNV gain 25217958
dgv7073n100 CNV loss 25217958
dgv7074n100 CNV gain 25217958
dgv7075n100 CNV gain 25217958
dgv7076n100 CNV gain+loss 25217958
dgv7077n100 CNV gain 25217958
dgv7078n100 CNV gain 25217958
dgv7079n100 CNV gain+loss 25217958
dgv7080n100 CNV loss 25217958
dgv7081n100 CNV loss 25217958
dgv7082n100 CNV gain 25217958
esv2425398 CNV loss 19546169
esv2517134 CNV loss 19546169
esv25198 CNV gain+loss 19812545
esv2670090 CNV deletion 23128226
esv2736614 CNV deletion 23290073
esv2759593 CNV gain+loss 17122850
esv3347421 CNV duplication 20981092
esv3353065 CNV duplication 20981092
esv3366711 CNV duplication 20981092
esv3380774 CNV duplication 20981092
esv3385133 CNV duplication 20981092
esv3393655 CNV duplication 20981092
esv3409351 CNV duplication 20981092
esv3410025 CNV duplication 20981092
esv3418795 CNV duplication 20981092
esv3429031 CNV duplication 20981092
esv3434912 CNV duplication 20981092
esv3440689 CNV duplication 20981092
esv3444025 CNV duplication 20981092
esv3616283 CNV loss 21293372
esv3616284 CNV gain 21293372
esv3616285 CNV loss 21293372
esv3616287 CNV loss 21293372
esv3891341 CNV gain 25118596
esv3891342 CNV loss 25118596
nsv1017747 CNV loss 25217958
nsv1018755 CNV gain 25217958
nsv1020404 CNV loss 25217958
nsv1020906 CNV loss 25217958
nsv1025089 CNV loss 25217958
nsv1027707 CNV loss 25217958
nsv1074190 CNV deletion 25765185
nsv1076061 CNV deletion 25765185
nsv1077016 CNV deletion 25765185
nsv1077017 CNV deletion 25765185
nsv1077018 CNV deletion 25765185
nsv1077520 CNV duplication 25765185
nsv1077521 CNV duplication 25765185
nsv1078273 CNV insertion 25765185
nsv1111357 CNV tandem duplication 24896259
nsv1121685 CNV deletion 24896259
nsv1125940 CNV tandem duplication 24896259
nsv1125941 CNV tandem duplication 24896259
nsv1132133 CNV deletion 24896259
nsv1132971 CNV insertion 24896259
nsv1147630 CNV deletion 26484159
nsv1151737 CNV duplication 26484159
nsv1153376 CNV duplication 26484159
nsv1161725 CNV duplication 26073780
nsv1161726 CNV deletion 26073780
nsv428195 CNV gain 18775914
nsv436599 CNV deletion 17901297
nsv469548 CNV gain+loss 16826518
nsv499686 CNV loss 21111241
nsv516685 CNV gain+loss 19592680
nsv6082 CNV deletion 18451855
nsv6083 CNV insertion 18451855
nsv610405 CNV loss 21841781
nsv821657 CNV loss 15273396
nsv8288 CNV gain+loss 18304495
nsv831235 CNV loss 17160897
nsv831236 CNV loss 17160897
nsv831238 CNV loss 17160897
nsv951107 CNV duplication 24416366
nsv957661 CNV deletion 24416366
nsv958467 CNV deletion 24416366
nsv967652 CNV duplication 23825009
nsv967653 CNV duplication 23825009
nsv967654 CNV duplication 23825009
nsv971288 CNV duplication 23825009
nsv971716 CNV duplication 23825009
nsv972106 CNV duplication 23825009
nsv972107 CNV duplication 23825009
nsv981994 CNV duplication 23825009

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC729732 Gene

Disorders for LOC729732 Gene

Additional Disease Information for LOC729732

Open Targets Platform
Open Targets Platform

No disorders were found for LOC729732 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC729732 Gene

Publications for LOC729732 Gene

  1. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. (PMID: 26760575) Uren PJ … Penalva LO (RNA biology 2016) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC729732 Gene

Products for LOC729732 Gene

Sources for LOC729732 Gene