Aliases for LOC729652 Gene

Subcategory (RNA class) for LOC729652 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC729652 Gene

  • Uncharacterized LOC729652 3
  • Novel Transcript, Antisense To C16orf59 5
  • NONHSAG018335.2 91
  • Lnc-CEMP1-4 165
  • AC106820.2 5

External Ids for LOC729652 Gene

Previous GeneCards Identifiers for LOC729652 Gene

  • GC16M002458
  • GC16U901262
  • GC16M002515

Summaries for LOC729652 Gene

GeneCards Summary for LOC729652 Gene

LOC729652 (Uncharacterized LOC729652) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC729652 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729652 Gene

Genomics for LOC729652 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC729652 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J002473 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.2 -207 3.7 HNRNPL PRDM10 CTCF ZNF692 POLR2A BACH1 TARDBP LARP7 MTA2 ZIC2 TBC1D24 ENSG00000260293 LOC729652 IFT140 ZNF75A TIGD7 NME3 ZNF213-AS1 ZSCAN32 ZNF174
GH16J002467 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +4.8 4833 6.4 SP1 HNRNPL GATAD2A PRDM10 ZNF629 TFE3 IKZF1 ZNF692 BACH1 LARP7 NTN3 ZNF75A TSC2 ZNF213-AS1 ERVK13-1 CRAMP1 ZNF263 TELO2 E4F1 ENSG00000260778
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729652 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC729652 gene promoter:
  • AP-4
  • AREB6
  • CREB
  • Elk-1
  • HSF2
  • ITF-2
  • Nkx2-5
  • Pax-5
  • Tal-1beta
  • Zic1

Genomic Locations for LOC729652 Gene

Genomic Locations for LOC729652 Gene
chr16:2,464,830-2,475,033
(GRCh38/hg38)
Size:
10,204 bases
Orientation:
Minus strand
chr16:2,514,951-2,518,214
(GRCh37/hg19)
Size:
3,264 bases
Orientation:
Minus strand

Genomic View for LOC729652 Gene

Genes around LOC729652 on UCSC Golden Path with GeneCards custom track
LOC729652 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC729652 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729652 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729652 Gene

Proteins for LOC729652 Gene

Post-translational modifications for LOC729652 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729652 Gene

Domains & Families for LOC729652 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729652 Gene

Function for LOC729652 Gene

Phenotypes for LOC729652 Gene

genes like me logo Genes that share phenotypes with LOC729652: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729652 Gene

Localization for LOC729652 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729652 Gene

Pathways & Interactions for LOC729652 Gene

PathCards logo

SuperPathways for LOC729652 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC729652 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC729652 Gene

Drugs & Compounds for LOC729652 Gene

No Compound Related Data Available

Transcripts for LOC729652 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC729652 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002E8BB0_9606 lncRNA 3264 4

RefSeq: NR_135198,

Ensembl: ENST00000563775 (view in UCSC) ,

LNCipedia: lnc-CEMP1-4:1,

NONCODE: NONHSAT052117.2,

URS0000D5A10F_9606 lncRNA 5881 1

LNCipedia: lnc-CEMP1-4:2,

URS0000D5C39A_9606 lncRNA 5599 1

LNCipedia: lnc-CEMP1-4:3,

LOC729652 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC729652 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729652 Gene

No ASD Table

Relevant External Links for LOC729652 Gene

GeneLoc Exon Structure for
LOC729652

Expression for LOC729652 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC729652 Gene

mRNA differential expression in normal tissues according to GTEx for LOC729652 Gene

This gene is overexpressed in Testis (x13.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC729652

genes like me logo Genes that share expression patterns with LOC729652: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729652 Gene

Orthologs for LOC729652 Gene

Evolution for LOC729652 Gene

ENSEMBL:
Gene Tree for LOC729652 (if available)
TreeFam:
Gene Tree for LOC729652 (if available)

No data available for Orthologs for LOC729652 Gene

Paralogs for LOC729652 Gene

No data available for Paralogs for LOC729652 Gene

Variants for LOC729652 Gene

Additional dbSNP identifiers (rs#s) for LOC729652 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC729652 Gene

Disorders for LOC729652 Gene

No disorders were found for LOC729652 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729652 Gene

Publications for LOC729652 Gene

No publications were found for LOC729652 Gene.

No data available for Mastermind for LOC729652 Gene

Products for LOC729652 Gene

Sources for LOC729652 Gene