Aliases for LOC729609 Gene

Subcategory (RNA class) for LOC729609 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC729609 Gene

  • Uncharacterized LOC729609 3
  • NONHSAG054126.2 91
  • HSALNG0136914 164
  • Lnc-MAP7D2-1 165

External Ids for LOC729609 Gene

Previous GeneCards Identifiers for LOC729609 Gene

  • GC0XM019918
  • GC0XU901220
  • GC0XM020004

Summaries for LOC729609 Gene

GeneCards Summary for LOC729609 Gene

LOC729609 (Uncharacterized LOC729609) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC729609 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729609 Gene

Genomics for LOC729609 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC729609 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ019989 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 600.7 +0.3 342 2.4 CTCF HNRNPL PRDM10 LARP7 ZNF143 RBFOX2 POLR2A PATZ1 REST NR2C1 BCLAF3 LOC729609 MAP7D2 RF00017-8211 RF00017-8204 SH3KBP1
GH0XJ019964 Enhancer 0.6 ENCODE 0.4 +23.7 23675 5.7 PRDM10 RELB RUNX3 FOXA2 BCL11A USF2 JUNB BATF ATF2 ATF7 BCLAF3 SH3KBP1 MAP7D2 RF00017-8209 RF00017-8210 LOC729609 RF00017-8204
GH0XJ019981 Enhancer 0.3 Ensembl 0.4 +8.9 8942 1 ZSCAN4 RF00017-8210 BCLAF3 MAP7D2 ENSG00000206663 LOC729609 RF00017-8204 SH3KBP1
GH0XJ019975 Enhancer 0.3 Ensembl ENCODE 0.4 +15.4 15426 1.6 MAP7D2 SH3KBP1 RF00017-8210 RF00017-8209 BCLAF3 LOC729609 RF00017-8204
GH0XJ019983 Enhancer 0.2 Ensembl 0.4 +7.9 7942 0.2 MAP7D2 ENSG00000206663 RF00017-8210 BCLAF3 LOC729609 RF00017-8204 SH3KBP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729609 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC729609 gene promoter:
  • AREB6
  • FOXO3
  • FOXO3a
  • FOXO3b
  • GATA-1
  • Ik-1
  • Ik-3
  • POU2F1
  • POU2F1a
  • STAT5A

Genomic Locations for LOC729609 Gene

Genomic Locations for LOC729609 Gene
chrX:19,965,402-19,991,043
(GRCh38/hg38)
Size:
25,642 bases
Orientation:
Minus strand
chrX:20,004,935-20,007,897
(GRCh37/hg19)
Size:
2,963 bases
Orientation:
Minus strand

Genomic View for LOC729609 Gene

Genes around LOC729609 on UCSC Golden Path with GeneCards custom track
LOC729609 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC729609 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729609 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729609 Gene

Proteins for LOC729609 Gene

Post-translational modifications for LOC729609 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729609 Gene

Domains & Families for LOC729609 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729609 Gene

Function for LOC729609 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729609 Gene

Localization for LOC729609 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729609 Gene

Pathways & Interactions for LOC729609 Gene

PathCards logo

SuperPathways for LOC729609 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC729609 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC729609 Gene

Drugs & Compounds for LOC729609 Gene

No Compound Related Data Available

Transcripts for LOC729609 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC729609 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C4DB_9606 lncRNA 628 3

RefSeq: NR_024440,

LNCipedia: lnc-MAP7D2-1:2,

NONCODE: NONHSAT136443.2,

URS00008B3053_9606 lncRNA 1664 3

LncBook: HSALNT0280725,

LNCipedia: lnc-MAP7D2-1:1,

NONCODE: NONHSAT136444.2,

URS00009C46E1_9606 lncRNA 1664 2

LncBook: HSALNT0280726,

NONCODE: NONHSAT223224.1,

URS00009B745B_9606 lncRNA 1086 1

NONCODE: NONHSAT223223.1,

LOC729609 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC729609 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729609 Gene

No ASD Table

Relevant External Links for LOC729609 Gene

GeneLoc Exon Structure for
LOC729609

Expression for LOC729609 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC729609 Gene

mRNA expression in normal human tissues for LOC729609 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC729609

SOURCE GeneReport for Unigene cluster for LOC729609 Gene:

Hs.554726
genes like me logo Genes that share expression patterns with LOC729609: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729609 Gene

Orthologs for LOC729609 Gene

No data available for Orthologs and Evolution for LOC729609 Gene

Paralogs for LOC729609 Gene

No data available for Paralogs for LOC729609 Gene

Variants for LOC729609 Gene

Additional dbSNP identifiers (rs#s) for LOC729609 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC729609 Gene

Disorders for LOC729609 Gene

No disorders were found for LOC729609 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729609 Gene

Publications for LOC729609 Gene

No publications were found for LOC729609 Gene.

No data available for Mastermind for LOC729609 Gene

Products for LOC729609 Gene

Sources for LOC729609 Gene