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Aliases for LOC729603 Gene

Subcategory (RNA class) for LOC729603 Gene

lncRNA

Aliases for LOC729603 Gene

  • Calcineurin Like EF-Hand Protein 1 Pseudogene 3
  • AL353625.1 5

External Ids for LOC729603 Gene

ORGUL Members for LOC729603 Gene

Previous GeneCards Identifiers for LOC729603 Gene

  • GC06P160434
  • GC06P160515

Summaries for LOC729603 Gene

Entrez Gene Summary for LOC729603 Gene

  • This locus on chromosome 6q25.3 represents a single-exon transcribed pseudogene of the multi-exon calcium binding protein P22 gene which resides on chromosome 15q13.3. This pseudogene is situated within an intron region of the insulin-like growth factor 2 receptor gene (IGF2R). [provided by RefSeq, Jan 2009]

GeneCards Summary for LOC729603 Gene

LOC729603 (Calcineurin Like EF-Hand Protein 1 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC729603 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC729603 Gene

Genomics for LOC729603 Gene

GeneHancer (GH) Regulatory Elements for LOC729603 Gene

Promoters and enhancers for LOC729603 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I159787 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 21.7 -303.1 -303064 5.4 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 MRPL18 TCP1 WTAP LOC729603 PNLDC1
GH06I159725 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.2 -364.8 -364818 5.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 WTAP GC06M159725 MRPL18 TCP1 PNLDC1 ACAT2 SOD2-OT1 SOD2 SNORA29 SNORA20
GH06I160519 Enhancer 1.2 Ensembl ENCODE 11.2 +427.2 427238 1.8 ATF1 ARNT SIN3A ZNF2 ZNF48 YY1 ZNF766 ARID2 ZNF143 ATF7 LPAL2 WTAP LOC729603 MAP3K4 LPA
GH06I159966 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 4.9 -124.4 -124354 5.5 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B IGF2R MAS1 ENSG00000236823 SLC22A1 LOC729603 LOC105378087
GH06I159999 Enhancer 1 ENCODE dbSUPER 11.3 -93.6 -93608 0.5 HDAC1 TCF12 ATF7 CEBPB NCOA1 ZEB2 ZNF592 SMARCA4 IKZF1 NR2C1 WTAP LOC729603 MAP3K4 IGF2R SLC22A1 AIRN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC729603 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC729603 gene promoter:

Genomic Locations for LOC729603 Gene

Genomic Locations for LOC729603 Gene
chr6:160,093,082-160,096,212
(GRCh38/hg38)
Size:
3,131 bases
Orientation:
Plus strand
chr6:160,514,114-160,517,244
(GRCh37/hg19)

Genomic View for LOC729603 Gene

Genes around LOC729603 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729603 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729603 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729603 Gene

Proteins for LOC729603 Gene

Post-translational modifications for LOC729603 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729603 Gene

Domains & Families for LOC729603 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC729603 Gene

Function for LOC729603 Gene

Phenotypes From GWAS Catalog for LOC729603 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729603 Gene

Localization for LOC729603 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729603 Gene

Pathways & Interactions for LOC729603 Gene

SuperPathways for LOC729603 Gene

No Data Available

Interacting Proteins for LOC729603 Gene

Gene Ontology (GO) - Biological Process for LOC729603 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC729603 Gene

Drugs & Compounds for LOC729603 Gene

No Compound Related Data Available

Transcripts for LOC729603 Gene

mRNA/cDNA for LOC729603 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC729603 Gene

Calcium binding protein P22 pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729603 Gene

No ASD Table

Relevant External Links for LOC729603 Gene

GeneLoc Exon Structure for
LOC729603

Expression for LOC729603 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC729603 Gene

mRNA differential expression in normal tissues according to GTEx for LOC729603 Gene

This gene is overexpressed in Whole Blood (x6.5).

SOURCE GeneReport for Unigene cluster for LOC729603 Gene:

Hs.674810
genes like me logo Genes that share expression patterns with LOC729603: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729603 Gene

Orthologs for LOC729603 Gene

Evolution for LOC729603 Gene

ENSEMBL:
Gene Tree for LOC729603 (if available)
TreeFam:
Gene Tree for LOC729603 (if available)

No data available for Orthologs for LOC729603 Gene

Paralogs for LOC729603 Gene

No data available for Paralogs for LOC729603 Gene

Variants for LOC729603 Gene

Sequence variations from dbSNP and Humsavar for LOC729603 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs8191933 benign, not specified 160,096,440(+) C/T downstream_transcript_variant
rs1000796301 -- 160,095,476(+) A/G non_coding_transcript_variant
rs1002413410 -- 160,095,990(+) C/T non_coding_transcript_variant
rs1002967830 -- 160,095,164(+) A/G non_coding_transcript_variant
rs1003346740 -- 160,094,129(+) C/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC729603 Gene

Variant ID Type Subtype PubMed ID
esv2759484 CNV gain+loss 17122850
esv35098 CNV gain 17911159
esv3611425 CNV gain 21293372
nsv818463 CNV gain 17921354

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC729603 Gene

Disorders for LOC729603 Gene

Additional Disease Information for LOC729603

No disorders were found for LOC729603 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC729603 Gene

Publications for LOC729603 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC729603 Gene

Sources for LOC729603 Gene

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