This locus on chromosome 6q25.3 represents a single-exon transcribed pseudogene of the multi-exon calcium binding protein P22 gene which resides on chromosome 15q13.3. This pseudogene is situated within an intron region of the insulin-like growth factor 2 receptor gene (IGF2R). [provided by RefSeq, Jan 2009] See more...

Aliases for LOC729603 Gene

Aliases for LOC729603 Gene

  • Calcineurin Like EF-Hand Protein 1 Pseudogene 3
  • Calcium Binding Protein P22 (CHP) Pseudogene 5
  • Calcium Binding Protein P22 Pseudogene 3
  • AL353625.1 5

External Ids for LOC729603 Gene

Previous GeneCards Identifiers for LOC729603 Gene

  • GC06P160434
  • GC06P160515

Summaries for LOC729603 Gene

Entrez Gene Summary for LOC729603 Gene

  • This locus on chromosome 6q25.3 represents a single-exon transcribed pseudogene of the multi-exon calcium binding protein P22 gene which resides on chromosome 15q13.3. This pseudogene is situated within an intron region of the insulin-like growth factor 2 receptor gene (IGF2R). [provided by RefSeq, Jan 2009]

GeneCards Summary for LOC729603 Gene

LOC729603 (Calcineurin Like EF-Hand Protein 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC729603 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729603 Gene

Genomics for LOC729603 Gene

GeneHancer (GH) Regulatory Elements for LOC729603 Gene

Promoters and enhancers for LOC729603 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J159787 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 31.7 -303.1 -303064 5.4 FOXK2 HNRNPK ZBTB40 EP300 SIN3A NRF1 MYC POLR2G SP1 PHF8 MRPL18 TCP1 HSALNG0054782 lnc-SOD2-5 WTAP LOC729603 PNLDC1
GH06J159690 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 13.2 -399.7 -399683 5.8 FOXK2 HNRNPK CTCF SIN3A NRF1 TCF12 POLR2G SP1 NCOR1 BCLAF1 SOD2 JA662193 lnc-WTAP-4 lnc-TCP1-5 WTAP MRPL18 PNLDC1 LOC729603 ACAT2 SNORA29
GH06J159966 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 13.7 -124.0 -124013 5.9 ZBTB40 SIN3A NRF1 POLR2G USF1 SP1 GTF2E2 PHF8 ZFX ZIC2 IGF2R lnc-TCP1-6 WTAP LOC729603 MAS1 ENSG00000236823 SLC22A1
GH06J160347 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 13.2 +256.1 256111 3.6 POLR2G NCOR1 CTCF ZIC2 KDM6A TCF7 ZBTB26 TGIF2 TEAD1 HDAC2 SLC22A3 WTAP LOC729603 MAP3K4 piR-61240-258
GH06J159759 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.8 -331.4 -331379 4.2 ZBTB40 EP300 ZSCAN5C SIN3A NRF1 POLR2G SP1 NCOR1 TEAD4 FOS ACAT2 ENSG00000285441 SOD2-OT1 MRPL18 WTAP LOC729603 PNLDC1 SOD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729603 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC729603 gene promoter:
  • AML1a
  • COUP
  • Egr-4
  • GATA-1
  • HNF-4alpha1
  • Lmo2
  • NF-E2
  • NF-E2 p45
  • Sox9

Genomic Locations for LOC729603 Gene

Genomic Locations for LOC729603 Gene
chr6:160,093,082-160,096,212
(GRCh38/hg38)
Size:
3,131 bases
Orientation:
Plus strand
chr6:160,514,114-160,517,244
(GRCh37/hg19)
Size:
3,131 bases
Orientation:
Plus strand

Genomic View for LOC729603 Gene

Genes around LOC729603 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729603 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729603 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729603 Gene

Proteins for LOC729603 Gene

Post-translational modifications for LOC729603 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729603 Gene

Domains & Families for LOC729603 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729603 Gene

Function for LOC729603 Gene

Phenotypes From GWAS Catalog for LOC729603 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729603 Gene

Localization for LOC729603 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729603 Gene

Pathways & Interactions for LOC729603 Gene

PathCards logo

SuperPathways for LOC729603 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC729603 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC729603 Gene

Drugs & Compounds for LOC729603 Gene

No Compound Related Data Available

Transcripts for LOC729603 Gene

mRNA/cDNA for LOC729603 Gene

3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729603 Gene

No ASD Table

Relevant External Links for LOC729603 Gene

GeneLoc Exon Structure for
LOC729603

Expression for LOC729603 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC729603 Gene

mRNA differential expression in normal tissues according to GTEx for LOC729603 Gene

This gene is overexpressed in Whole Blood (x6.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC729603

SOURCE GeneReport for Unigene cluster for LOC729603 Gene:

Hs.674810
genes like me logo Genes that share expression patterns with LOC729603: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729603 Gene

Orthologs for LOC729603 Gene

Evolution for LOC729603 Gene

ENSEMBL:
Gene Tree for LOC729603 (if available)
TreeFam:
Gene Tree for LOC729603 (if available)

No data available for Orthologs for LOC729603 Gene

Paralogs for LOC729603 Gene

No data available for Paralogs for LOC729603 Gene

Variants for LOC729603 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC729603 Gene

Variant ID Type Subtype PubMed ID
esv2759484 CNV gain+loss 17122850
esv35098 CNV gain 17911159
esv3611425 CNV gain 21293372
nsv818463 CNV gain 17921354

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC729603 Gene

Disorders for LOC729603 Gene

No disorders were found for LOC729603 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729603 Gene

Publications for LOC729603 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC729603 Gene

Products for LOC729603 Gene

Sources for LOC729603 Gene