Aliases for LOC729317 Gene

Aliases for LOC729317 Gene

  • Voltage Dependent Anion Channel 2 Pseudogene 3

External Ids for LOC729317 Gene

Previous GeneCards Identifiers for LOC729317 Gene

  • GC02P065286
  • GC02P065433
  • GC02P065204

Summaries for LOC729317 Gene

GeneCards Summary for LOC729317 Gene

LOC729317 (Voltage Dependent Anion Channel 2 Pseudogene) is a Pseudogene.

Additional gene information for LOC729317 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729317 Gene

Genomics for LOC729317 Gene

GeneHancer (GH) Regulatory Elements for LOC729317 Gene

Promoters and enhancers for LOC729317 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J065204 Promoter 0.4 Ensembl 500.7 -0.1 -75 0.4 CEBPA ENSG00000172974 LOC729317 lnc-ACTR2-11 lnc-ACTR2-5 LINC02576 ENSG00000273763 lnc-RAB1A-11
GH02J065206 Enhancer 0.2 Ensembl 500.7 +1.0 1025 0.2 ENSG00000172974 LOC729317 lnc-ACTR2-11 ACTR2 LINC02576 ENSG00000273763 lnc-RAB1A-11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729317 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC729317 gene promoter:
  • C/EBPalpha
  • FOXD1
  • FOXF2
  • FOXJ2
  • FOXJ2 (long isoform)
  • Ik-2
  • NRF-2
  • SRF
  • SRF (504 AA)
  • TBP

Genomic Locations for LOC729317 Gene

Genomic Locations for LOC729317 Gene
chr2:65,205,076-65,206,278
(GRCh38/hg38)
Size:
1,203 bases
Orientation:
Plus strand
chr2:65,432,109-65,433,412
(GRCh37/hg19)
Size:
1,304 bases
Orientation:
Plus strand

Genomic View for LOC729317 Gene

Genes around LOC729317 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729317 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729317 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729317 Gene

Proteins for LOC729317 Gene

Post-translational modifications for LOC729317 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729317 Gene

Domains & Families for LOC729317 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729317 Gene

Function for LOC729317 Gene

Phenotypes for LOC729317 Gene

genes like me logo Genes that share phenotypes with LOC729317: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729317 Gene

Localization for LOC729317 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729317 Gene

Pathways & Interactions for LOC729317 Gene

PathCards logo

SuperPathways for LOC729317 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC729317 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC729317 Gene

Drugs & Compounds for LOC729317 Gene

No Compound Related Data Available

Transcripts for LOC729317 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729317 Gene

No ASD Table

Relevant External Links for LOC729317 Gene

GeneLoc Exon Structure for
LOC729317

No data available for mRNA/cDNA for LOC729317 Gene

Expression for LOC729317 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC729317 Gene

mRNA expression in normal human tissues for LOC729317 Gene
genes like me logo Genes that share expression patterns with LOC729317: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729317 Gene

Orthologs for LOC729317 Gene

No data available for Orthologs and Evolution for LOC729317 Gene

Paralogs for LOC729317 Gene

No data available for Paralogs for LOC729317 Gene

Variants for LOC729317 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC729317 Gene

Disorders for LOC729317 Gene

No disorders were found for LOC729317 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729317 Gene

Publications for LOC729317 Gene

  1. Mapping of the human Voltage-Dependent Anion Channel isoforms 1 and 2 reconsidered. (PMID: 10049775) Messina A … De Pinto V (Biochemical and biophysical research communications 1999) 3 54
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 54

No data available for Mastermind for LOC729317 Gene

Products for LOC729317 Gene

Sources for LOC729317 Gene