Aliases for LOC729080 Gene

Aliases for LOC729080 Gene

  • Glycine Cleavage System Protein H (Aminomethyl Carrier) Pseudogene 3

External Ids for LOC729080 Gene

Previous GeneCards Identifiers for LOC729080 Gene

  • GC05M141256

Summaries for LOC729080 Gene

GeneCards Summary for LOC729080 Gene

LOC729080 (Glycine Cleavage System Protein H (Aminomethyl Carrier) Pseudogene) is a Pseudogene.

Additional gene information for LOC729080 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729080 Gene

Genomics for LOC729080 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC729080 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J141897 Enhancer 0.3 Ensembl 0.7 -2.0 -2006 2.2 CEBPB HLF DELE1 LOC729080 piR-38756-004 PCDH1 ENSG00000287726 RF00017-4966
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729080 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC729080 gene promoter:
  • AML1a
  • Chx10
  • CUTL1
  • FOXJ2
  • FOXJ2 (long isoform)
  • FOXO4
  • HOXA5
  • NF-E2
  • NF-E2 p45
  • SRY

Genomic Locations for LOC729080 Gene

Genomic Locations for LOC729080 Gene
chr5:141,895,626-141,896,695
(GRCh38/hg38)
Size:
1,070 bases
Orientation:
Minus strand
chr5:141,275,191-141,276,260
(GRCh37/hg19)
Size:
1,070 bases
Orientation:
Minus strand

Genomic View for LOC729080 Gene

Genes around LOC729080 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729080 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729080 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729080 Gene

Proteins for LOC729080 Gene

Post-translational modifications for LOC729080 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729080 Gene

Domains & Families for LOC729080 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729080 Gene

Function for LOC729080 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729080 Gene

Localization for LOC729080 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729080 Gene

Pathways & Interactions for LOC729080 Gene

PathCards logo

SuperPathways for LOC729080 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC729080 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC729080 Gene

Drugs & Compounds for LOC729080 Gene

No Compound Related Data Available

Transcripts for LOC729080 Gene

mRNA/cDNA for LOC729080 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729080 Gene

No ASD Table

Relevant External Links for LOC729080 Gene

GeneLoc Exon Structure for
LOC729080

Expression for LOC729080 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC729080 Gene

mRNA differential expression in normal tissues according to GTEx for LOC729080 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.6) and Brain - Cerebellum (x5.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC729080

SOURCE GeneReport for Unigene cluster for LOC729080 Gene:

Hs.730564
genes like me logo Genes that share expression patterns with LOC729080: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729080 Gene

Orthologs for LOC729080 Gene

No data available for Orthologs and Evolution for LOC729080 Gene

Paralogs for LOC729080 Gene

No data available for Paralogs for LOC729080 Gene

Variants for LOC729080 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC729080 Gene

Variant ID Type Subtype PubMed ID
nsv1154058 CNV deletion 26484159
nsv968999 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC729080 Gene

Disorders for LOC729080 Gene

No disorders were found for LOC729080 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729080 Gene

Publications for LOC729080 Gene

No publications were found for LOC729080 Gene.

No data available for Mastermind for LOC729080 Gene

Products for LOC729080 Gene

Sources for LOC729080 Gene