Aliases for LOC729056 Gene

Aliases for LOC729056 Gene

  • Junctional Cadherin 5 Associated Pseudogene 3
  • KIAA1462 Pseudogene 5
  • AF121897.1 5

External Ids for LOC729056 Gene

Previous GeneCards Identifiers for LOC729056 Gene

  • GC21P039819
  • GC21P040898

Summaries for LOC729056 Gene

GeneCards Summary for LOC729056 Gene

LOC729056 (Junctional Cadherin 5 Associated Pseudogene) is a Pseudogene.

Additional gene information for LOC729056 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC729056 Gene

Genomics for LOC729056 Gene

GeneHancer (GH) Regulatory Elements for LOC729056 Gene

Promoters and enhancers for LOC729056 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J039523 Enhancer 0.8 Ensembl ENCODE dbSUPER 750.6 -1.9 -1882 1.8 GATA3 ZNF217 NCOA3 MYC CTBP1 LOC729056 lnc-SH3BGR-1 B3GALT5 LCA5L RPS26P4
GH21J039525 Enhancer 0.4 Ensembl dbSUPER 750.6 +0.3 318 0.2 ZBTB40 LOC729056 lnc-SH3BGR-1 B3GALT5 piR-36588-257
GH21J039527 Enhancer 1 Ensembl ENCODE dbSUPER 0.6 +2.5 2518 2.6 NR2F6 ZNF217 MNT NFIB SP1 MAFK RXRA REST CTBP1 ZNF316 B3GALT5 LCA5L SH3BGR LOC729056 lnc-SH3BGR-1 piR-36588-257
GH21J039518 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -6.9 -6862 1 CTCF NR2F6 CC2D1A L3MBTL2 ZNF121 RAD21 RXRA REST TRIM22 ZNF143 LCA5L HMGN1 B3GALT5 LOC729056 lnc-SH3BGR-1 RPS26P4
GH21J039535 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +11.7 11700 3.5 POU5F1 SP1 NRF1 ZBTB5 FOSL1 ETS1 MAFK POLR2A NANOG B3GALT5 LCA5L B3GALT5-AS1 SH3BGR piR-36588-257 LOC729056 lnc-SH3BGR-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC729056 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC729056 Gene

Genomic Locations for LOC729056 Gene
chr21:39,525,583-39,529,855
(GRCh38/hg38)
Size:
4,273 bases
Orientation:
Plus strand
chr21:40,897,510-40,901,782
(GRCh37/hg19)
Size:
4,273 bases
Orientation:
Plus strand

Genomic View for LOC729056 Gene

Genes around LOC729056 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729056 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729056 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729056 Gene

Proteins for LOC729056 Gene

Post-translational modifications for LOC729056 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729056 Gene

Domains & Families for LOC729056 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC729056 Gene

Function for LOC729056 Gene

Phenotypes From GWAS Catalog for LOC729056 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729056 Gene

Localization for LOC729056 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729056 Gene

Pathways & Interactions for LOC729056 Gene

PathCards logo

SuperPathways for LOC729056 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC729056 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC729056 Gene

Drugs & Compounds for LOC729056 Gene

No Compound Related Data Available

Transcripts for LOC729056 Gene

mRNA/cDNA for LOC729056 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729056 Gene

No ASD Table

Relevant External Links for LOC729056 Gene

GeneLoc Exon Structure for
LOC729056

Expression for LOC729056 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC729056 Gene

mRNA differential expression in normal tissues according to GTEx for LOC729056 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x6.4), Brain - Putamen (basal ganglia) (x5.0), Brain - Caudate (basal ganglia) (x4.7), and Muscle - Skeletal (x4.4).
genes like me logo Genes that share expression patterns with LOC729056: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729056 Gene

Orthologs for LOC729056 Gene

Evolution for LOC729056 Gene

ENSEMBL:
Gene Tree for LOC729056 (if available)
TreeFam:
Gene Tree for LOC729056 (if available)

No data available for Orthologs for LOC729056 Gene

Paralogs for LOC729056 Gene

No data available for Paralogs for LOC729056 Gene

Variants for LOC729056 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC729056 Gene

Disorders for LOC729056 Gene

No disorders were found for LOC729056 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC729056 Gene

Publications for LOC729056 Gene

No publications were found for LOC729056 Gene.

No data available for External Links for LOC729056 Gene

Products for LOC729056 Gene

Sources for LOC729056 Gene