Aliases for LOC728975 Gene

Data sources for LOC728975 Gene:

Subcategory (RNA class) for LOC728975 Gene

lncRNA

Aliases for LOC728975 Gene

External Ids for LOC728975 Gene

Previous GeneCards Identifiers for LOC728975 Gene

  • GC11M064703
  • GC11M064947
  • GC11M065179

Summaries for LOC728975 Gene

GeneCards Summary for LOC728975 Gene

LOC728975 (Uncharacterized LOC728975) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC728975 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC728975 Gene

Genomics for LOC728975 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC728975 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC728975 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC728975 gene promoter:
  • Gfi-1
  • ITF-2
  • LCR-F1
  • Lmo2
  • p300
  • PPAR-gamma1
  • PPAR-gamma2
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c

Genomic Locations for LOC728975 Gene

Latest Assembly
chr11:65,177,605-65,181,834
(GRCh38/hg38)
Size:
4,230 bases
Orientation:
Minus strand

Previous Assembly
chr11:64,947,342-64,949,305
(GRCh37/hg19 by Entrez Gene)
Size:
1,964 bases
Orientation:
Minus strand

chr11:64,945,077-64,949,305
(GRCh37/hg19 by Ensembl)
Size:
4,229 bases
Orientation:
Minus strand

Genomic View for LOC728975 Gene

Genes around LOC728975 on UCSC Golden Path with GeneCards custom track
LOC728975 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC728975 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC728975 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC728975 Gene

Proteins for LOC728975 Gene

Post-translational modifications for LOC728975 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC728975 Gene

Domains & Families for LOC728975 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC728975 Gene

Function for LOC728975 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC728975 Gene

Localization for LOC728975 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC728975 Gene

Pathways & Interactions for LOC728975 Gene

PathCards logo

SuperPathways for LOC728975 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC728975 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC728975 Gene

Drugs & Compounds for LOC728975 Gene

No Compound Related Data Available

Transcripts for LOC728975 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC728975 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007BBB8C_9606 lncRNA 479 3

Ensembl: ENST00000528551 (view in UCSC) ,

LncBook: HSALNT0176719,

LNCipedia: lnc-SYVN1-3:2,

URS00007BD3D1_9606 lncRNA 1664 2

Ensembl: ENST00000526623 (view in UCSC) ,

LNCipedia: lnc-SYVN1-3:1,

URS0000ABD8A5_9606 lncRNA 1812 1

RefSeq: NR_145677,

URS0001BD99C5_9606 lncRNA 477 1

LncBook: HSALNT0176719,

LOC728975 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC728975 Gene

No ASD Table

Relevant External Links for LOC728975 Gene

GeneLoc Exon Structure for
LOC728975

No data available for mRNA/cDNA for LOC728975 Gene

Expression for LOC728975 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC728975 Gene

genes like me logo Genes that share expression patterns with LOC728975: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC728975 Gene

Orthologs for LOC728975 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC728975 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 97 (a)
OneToOne
Species where no ortholog for LOC728975 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LOC728975 Gene

ENSEMBL:
Gene Tree for LOC728975 (if available)
TreeFam:
Gene Tree for LOC728975 (if available)

Paralogs for LOC728975 Gene

No data available for Paralogs for LOC728975 Gene

Variants for LOC728975 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC728975 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC728975 Gene

Disorders for LOC728975 Gene

No disorders were found for LOC728975 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC728975 Gene

Publications for LOC728975 Gene

No publications were found for LOC728975 Gene.

No data available for Mastermind for LOC728975 Gene

Products for LOC728975 Gene

Sources for LOC728975 Gene