Aliases for LOC728975 Gene

Subcategory (RNA class) for LOC728975 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for LOC728975 Gene

  • Uncharacterized LOC728975 3

External Ids for LOC728975 Gene

Previous GeneCards Identifiers for LOC728975 Gene

  • GC11M064703
  • GC11M064947

Summaries for LOC728975 Gene

GeneCards Summary for LOC728975 Gene

LOC728975 (Uncharacterized LOC728975) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC728975 include Spastic Paraplegia 76, Autosomal Recessive.

Additional gene information for LOC728975 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC728975 Gene

Genomics for LOC728975 Gene

GeneHancer (GH) Regulatory Elements for LOC728975 Gene

Promoters and enhancers for LOC728975 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J065180 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.9 -856 5.4 ZBTB40 CTCF LCORL RBPJ POLR2A ZNF217 CC2D1A ELF1 RAD21 MNT ENSG00000254614 CAPN1 LOC728975 POLA2 RELA EIF1AD SART1 SF1 FRMD8 ZFPL1
GH11J065185 Enhancer 0.4 ENCODE 0.6 -4.2 -4231 0.2 CTCF CEBPB SIN3A ZBTB33 ENSG00000254614 LOC728975 CAPN1 lnc-SPDYC-2
GH11J065186 Enhancer 0.3 Ensembl 0.6 -4.8 -4767 0.4 CTCF ENSG00000254614 LOC728975 CAPN1 lnc-SPDYC-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC728975 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC728975 gene promoter:
  • Gfi-1
  • ITF-2
  • LCR-F1
  • Lmo2
  • p300
  • PPAR-gamma1
  • PPAR-gamma2
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c

Genomic Locations for LOC728975 Gene

Genomic Locations for LOC728975 Gene
chr11:65,179,871-65,181,834
(GRCh38/hg38)
Size:
1,964 bases
Orientation:
Minus strand
chr11:64,945,077-64,949,305
(GRCh37/hg19)
Size:
4,229 bases
Orientation:
Minus strand

Genomic View for LOC728975 Gene

Genes around LOC728975 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC728975 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC728975 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC728975 Gene

Proteins for LOC728975 Gene

Post-translational modifications for LOC728975 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC728975 Gene

Domains & Families for LOC728975 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC728975 Gene

Function for LOC728975 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC728975 Gene

Localization for LOC728975 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC728975 Gene

Pathways & Interactions for LOC728975 Gene

PathCards logo

SuperPathways for LOC728975 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC728975 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC728975 Gene

Drugs & Compounds for LOC728975 Gene

No Compound Related Data Available

Transcripts for LOC728975 Gene

mRNA/cDNA for LOC728975 Gene

(1) REFSEQ mRNAs :
(1) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC728975 Gene

No ASD Table

Relevant External Links for LOC728975 Gene

GeneLoc Exon Structure for
LOC728975

Expression for LOC728975 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC728975 Gene

genes like me logo Genes that share expression patterns with LOC728975: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC728975 Gene

Orthologs for LOC728975 Gene

No data available for Orthologs and Evolution for LOC728975 Gene

Paralogs for LOC728975 Gene

No data available for Paralogs for LOC728975 Gene

Variants for LOC728975 Gene

Sequence variations from dbSNP and Humsavar for LOC728975 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs875989845 pathogenic, Spastic paraplegia 76, autosomal recessive 65,183,542(-) CC/C upstream_transcript_variant
rs1000790318 -- 65,181,848(-) G/A upstream_transcript_variant
rs1001542385 -- 65,182,261(-) G/C upstream_transcript_variant
rs1001828544 -- 65,181,158(-) A/G intron_variant
rs1001901856 -- 65,181,414(-) A/G non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC728975 Gene

Disorders for LOC728975 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC728975 Gene - From: GeneCards

Disorder Aliases PubMed IDs
spastic paraplegia 76, autosomal recessive
  • spg76
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC728975: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC728975 Gene

Publications for LOC728975 Gene

No publications were found for LOC728975 Gene.

No data available for External Links for LOC728975 Gene

Products for LOC728975 Gene

Sources for LOC728975 Gene