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Aliases for LOC728975 Gene

Subcategory (RNA class) for LOC728975 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC728975 Gene

  • Uncharacterized LOC728975 3
  • AP003068.2 5

External Ids for LOC728975 Gene

Previous GeneCards Identifiers for LOC728975 Gene

  • GC11M064703
  • GC11M064947

Summaries for LOC728975 Gene

GeneCards Summary for LOC728975 Gene

LOC728975 (Uncharacterized LOC728975) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC728975 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC728975 Gene

Genomics for LOC728975 Gene

GeneHancer (GH) Regulatory Elements for LOC728975 Gene

Promoters and enhancers for LOC728975 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I065180 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 642.7 -0.9 -946 5.2 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZBTB7B E2F8 ZNF143 ZNF207 LOC728975 CAPN1 SPDYC POLA2 SLC22A20P
GH11I065211 Enhancer 1 Ensembl ENCODE dbSUPER 57.1 -31.1 -31135 3 USF1 MAX SIN3A ZIC2 ETS1 ZNF148 SP1 POLR2A GLIS1 IKZF1 SLC22A20P LOC728975 POLA2 CAPN1 PGAM1P8 CDC42EP2 SPDYC ZFPL1 CDCA5 VPS51
GH11I065277 Enhancer 1.1 Ensembl ENCODE dbSUPER 46.7 -97.8 -97812 4.5 JUN EBF1 BATF ZBTB40 RELA ZNF664 FOSL1 ATF7 FOSL2 FOS LOC728975 CDC42EP2 DPF2 SLC25A45 FRMD8 TIGD3 CAPN1 PGAM1P8 ENSG00000254501 TM7SF2
GH11I065129 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 21.6 +48.6 48561 7.2 CLOCK ZFP64 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC SYVN1 SPDYC LOC728975 SSSCA1 PGAM1P8 CAPN1 ZNHIT2 SF1 POLA2 SCYL1
GH11I065204 Enhancer 1.2 Ensembl ENCODE dbSUPER 34.5 -23.0 -22974 1 HDAC1 HDGF RB1 ZNF76 SIN3A ZNF2 RAD21 ARID2 SCRT2 ZNF143 LOC728975 SLC22A20P CAPN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC728975 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC728975 gene promoter:

Genomic Locations for LOC728975 Gene

Genomic Locations for LOC728975 Gene
chr11:65,177,606-65,181,834
(GRCh38/hg38)
Size:
4,229 bases
Orientation:
Minus strand
chr11:64,945,077-64,949,305
(GRCh37/hg19)

Genomic View for LOC728975 Gene

Genes around LOC728975 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC728975 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC728975 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC728975 Gene

Proteins for LOC728975 Gene

Post-translational modifications for LOC728975 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC728975 Gene

Domains & Families for LOC728975 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC728975 Gene

Function for LOC728975 Gene

Phenotypes From GWAS Catalog for LOC728975 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC728975 Gene

Localization for LOC728975 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC728975 Gene

Pathways & Interactions for LOC728975 Gene

SuperPathways for LOC728975 Gene

No Data Available

Interacting Proteins for LOC728975 Gene

Gene Ontology (GO) - Biological Process for LOC728975 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC728975 Gene

Drugs & Compounds for LOC728975 Gene

No Compound Related Data Available

Transcripts for LOC728975 Gene

mRNA/cDNA for LOC728975 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC728975 Gene

No ASD Table

Relevant External Links for LOC728975 Gene

GeneLoc Exon Structure for
LOC728975

Expression for LOC728975 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC728975 Gene

genes like me logo Genes that share expression patterns with LOC728975: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC728975 Gene

Orthologs for LOC728975 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC728975 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 97 (a)
OneToOne
Species where no ortholog for LOC728975 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC728975 Gene

ENSEMBL:
Gene Tree for LOC728975 (if available)
TreeFam:
Gene Tree for LOC728975 (if available)

Paralogs for LOC728975 Gene

No data available for Paralogs for LOC728975 Gene

Variants for LOC728975 Gene

Sequence variations from dbSNP and Humsavar for LOC728975 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs875989845 pathogenic, Spastic paraplegia 76, autosomal recessive 65,183,542(-) CC/C upstream_transcript_variant
rs1000790318 -- 65,181,848(-) G/A upstream_transcript_variant
rs1001542385 -- 65,182,261(-) G/C upstream_transcript_variant
rs1001828544 -- 65,181,158(-) A/G intron_variant
rs1001901856 -- 65,181,414(-) A/G non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC728975 Gene

Disorders for LOC728975 Gene

Additional Disease Information for LOC728975

No disorders were found for LOC728975 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC728975 Gene

Publications for LOC728975 Gene

No publications were found for LOC728975 Gene.

Products for LOC728975 Gene

Sources for LOC728975 Gene

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