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Aliases for LOC728715 Gene

Subcategory (RNA class) for LOC728715 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC728715 Gene

  • Ovostatin Homolog 2 3
  • AC141557.1 5

External Ids for LOC728715 Gene

Previous GeneCards Identifiers for LOC728715 Gene

  • GC12M009443
  • GC12M009549
  • GC12M009444
  • GC12M010159
  • GC12M010755
  • GC12M010988
  • GC12M011286
  • GC12M011520
  • GC12M011715
  • GC12M011902

Summaries for LOC728715 Gene

GeneCards Summary for LOC728715 Gene

LOC728715 (Ovostatin Homolog 2) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC728715 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC728715 Gene

Genomics for LOC728715 Gene

GeneHancer (GH) Regulatory Elements for LOC728715 Gene

Promoters and enhancers for LOC728715 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J009447 Promoter/Enhancer 1.5 Ensembl ENCODE 34.9 -33.7 -33668 2.8 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A ZNF2 TCF12 POLR2B GLIS2 DDX12P LOC105376678 ENSG00000284634 LOC728715 LOC642846 ENSG00000214776 M6PR CLEC2D ENSG00000213443 LINC00612
GH12J009453 Enhancer 0.8 ENCODE dbSUPER 30.6 -39.4 -39357 0.9 PKNOX1 ZNF211 RFX1 ZSCAN4 DPF2 MNT FOXA1 ZFHX2 CTBP1 GATA3 LOC728715 ENSG00000214776 LOC105376678 ENSG00000284634
GH12J010360 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -949.4 -949389 7.3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF213 ZNF143 LOC101928100 KLRK1 DDX12P ENSG00000213443 KLRA1P EIF2S3B ENSG00000257027 ENSG00000256682 CLEC2D ENSG00000255958
GH12J009363 Enhancer 1.1 Ensembl ENCODE 11.6 +49.8 49820 2.5 PKNOX1 SMAD1 DMAP1 IRF4 ZNF48 ATF7 FOS RUNX3 GTF2B JUNB GC12M012212 GC12M012236 GC12M012251 PIR39992 PIR31940 PIR32856 PIR50327 PIR42819 PIR35562 PIR60331
GH12J009666 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 6 -256.2 -256196 9.4 HDGF PKNOX1 SMAD1 IRF4 TCF12 GLIS2 FOS ATF7 RUNX3 RXRA CLEC2D ENSG00000213443 CLECL1 ENSG00000257027 ENSG00000214776 ENSG00000256594 LOC728715 ENSG00000255753 GC12M012310
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC728715 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC728715 gene promoter:
  • AREB6
  • Tal-1beta
  • E47
  • AML1a
  • STAT1
  • CUTL1
  • POU3F2
  • POU3F2 (N-Oct-5b)

Genomic Locations for LOC728715 Gene

Genomic Locations for LOC728715 Gene
chr12:9,397,062-9,414,851
(GRCh38/hg38)
Size:
17,790 bases
Orientation:
Minus strand
chr12:9,549,658-9,555,094
(GRCh37/hg19)
Size:
5,437 bases
Orientation:
Minus strand

Genomic View for LOC728715 Gene

Genes around LOC728715 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC728715 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC728715 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC728715 Gene

Proteins for LOC728715 Gene

Post-translational modifications for LOC728715 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC728715 Gene

Domains & Families for LOC728715 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC728715 Gene

Function for LOC728715 Gene

Phenotypes for LOC728715 Gene

genes like me logo Genes that share phenotypes with LOC728715: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC728715 Gene

Localization for LOC728715 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC728715 Gene

Pathways & Interactions for LOC728715 Gene

SuperPathways for LOC728715 Gene

No Data Available

Interacting Proteins for LOC728715 Gene

Gene Ontology (GO) - Biological Process for LOC728715 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC728715 Gene

Drugs & Compounds for LOC728715 Gene

No Compound Related Data Available

Transcripts for LOC728715 Gene

mRNA/cDNA for LOC728715 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC728715 Gene

Ovostatin homolog 2-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC728715 Gene

No ASD Table

Relevant External Links for LOC728715 Gene

GeneLoc Exon Structure for
LOC728715

Expression for LOC728715 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC728715 Gene

mRNA differential expression in normal tissues according to GTEx for LOC728715 Gene

This gene is overexpressed in Testis (x10.9).

SOURCE GeneReport for Unigene cluster for LOC728715 Gene:

Hs.434604
genes like me logo Genes that share expression patterns with LOC728715: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC728715 Gene

Orthologs for LOC728715 Gene

Evolution for LOC728715 Gene

ENSEMBL:
Gene Tree for LOC728715 (if available)
TreeFam:
Gene Tree for LOC728715 (if available)

No data available for Orthologs for LOC728715 Gene

Paralogs for LOC728715 Gene

No data available for Paralogs for LOC728715 Gene

Variants for LOC728715 Gene

Sequence variations from dbSNP and Humsavar for LOC728715 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000939475 -- 9,405,196(-) G/A upstream_transcript_variant
rs1002685602 -- 9,400,270(-) G/A coding_sequence_variant, missense_variant
rs1002718177 -- 9,400,537(-) A/C intron_variant
rs1003692420 -- 9,402,068(-) G/A intron_variant
rs1004360201 -- 9,403,342(-) T/C coding_sequence_variant, missense_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC728715 Gene

Disorders for LOC728715 Gene

No disorders were found for LOC728715 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC728715 Gene

Publications for LOC728715 Gene

  1. Genetic variants associated with breast size also influence breast cancer risk. (PMID: 22747683) Eriksson N … Tung JY (BMC medical genetics 2012) 3 58
  2. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 58

Products for LOC728715 Gene

Sources for LOC728715 Gene

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