Aliases for LOC728554 Gene

Aliases for LOC728554 Gene

  • THO Complex 3 Pseudogene 3

External Ids for LOC728554 Gene

Previous GeneCards Identifiers for LOC728554 Gene

  • GC05P177234
  • GC05P177303
  • GC05P177237
  • GC05P177809

Summaries for LOC728554 Gene

GeneCards Summary for LOC728554 Gene

LOC728554 (THO Complex 3 Pseudogene) is a Pseudogene.

Additional gene information for LOC728554 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC728554 Gene

Genomics for LOC728554 Gene

GeneHancer (GH) Regulatory Elements for LOC728554 Gene

Promoters and enhancers for LOC728554 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J177874 Promoter 0.6 Ensembl 750.6 +0.5 540 2.4 ZFHX2 ZNF335 NRF1 THAP11 ZNF398 LOC728554 ENSG00000170089 ENSG00000247679 lnc-FAM153C-9 LOC100128340 RF00017-5145
GH05J177872 Enhancer 0.2 Ensembl 0.6 -2.5 -2460 0.4 ENSG00000249186 LOC105377753 lnc-FAM153C-9 HNRNPAB LOC728554 ENSG00000170089 RF00017-5145
GH05J177883 Enhancer 0.2 Ensembl 0.4 +8.1 8065 0.7 LOC100128340 lnc-FAM153C-6 LOC728554 lnc-FAM153C-9 ENSG00000170089 RF00017-5145
GH05J177880 Enhancer 0.2 Ensembl 0.4 +6.1 6140 1.6 LOC100128340 LOC728554 lnc-FAM153C-9 ENSG00000170089 RF00017-5145
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC728554 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC728554 gene promoter:
  • ARP-1
  • c-Ets-1
  • E47
  • GATA-3
  • Hand1
  • NRF-2
  • Pbx1a
  • RORalpha1
  • RP58
  • Sox9

Genomic Locations for LOC728554 Gene

Genomic Locations for LOC728554 Gene
chr5:177,875,261-177,884,268
(GRCh38/hg38)
Size:
9,008 bases
Orientation:
Plus strand
chr5:177,236,408-177,377,733
(GRCh37/hg19)
Size:
141,326 bases
Orientation:
Plus strand

Genomic View for LOC728554 Gene

Genes around LOC728554 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC728554 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC728554 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC728554 Gene

Proteins for LOC728554 Gene

Post-translational modifications for LOC728554 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC728554 Gene

Domains & Families for LOC728554 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC728554 Gene

Function for LOC728554 Gene

genes like me logo Genes that share phenotypes with LOC728554: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC728554 Gene

Localization for LOC728554 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC728554 Gene

Pathways & Interactions for LOC728554 Gene

PathCards logo

SuperPathways for LOC728554 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC728554 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC728554 Gene

Drugs & Compounds for LOC728554 Gene

No Compound Related Data Available

Transcripts for LOC728554 Gene

mRNA/cDNA for LOC728554 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC728554 Gene

No ASD Table

Relevant External Links for LOC728554 Gene

GeneLoc Exon Structure for
LOC728554

Expression for LOC728554 Gene

SOURCE GeneReport for Unigene cluster for LOC728554 Gene:

Hs.535769
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC728554 Gene

Orthologs for LOC728554 Gene

No data available for Orthologs and Evolution for LOC728554 Gene

Paralogs for LOC728554 Gene

No data available for Paralogs for LOC728554 Gene

Variants for LOC728554 Gene

Sequence variations from dbSNP and Humsavar for LOC728554 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1002012601 -- 177,876,355(+) A/G intron_variant
rs1002066368 -- 177,874,685(+) T/G upstream_transcript_variant
rs1003064491 -- 177,880,342(+) C/T intron_variant
rs1003116784 -- 177,879,150(+) G/C intron_variant
rs1006964815 -- 177,878,896(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC728554 Gene

Variant ID Type Subtype PubMed ID
dgv5844n100 CNV gain 25217958
esv3448742 CNV duplication 20981092
esv3607697 CNV loss 21293372
nsv1033211 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC728554 Gene

Disorders for LOC728554 Gene

No disorders were found for LOC728554 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC728554 Gene

Publications for LOC728554 Gene

No publications were found for LOC728554 Gene.

No data available for External Links for LOC728554 Gene

Products for LOC728554 Gene

Sources for LOC728554 Gene