Aliases for LOC728024 Gene

Aliases for LOC728024 Gene

  • Chromosome X Open Reading Frame 56 Pseudogene 3
  • HCG1640171 3

External Ids for LOC728024 Gene

Previous GeneCards Identifiers for LOC728024 Gene

  • GC08M037725
  • GC08M037605

Summaries for LOC728024 Gene

GeneCards Summary for LOC728024 Gene

LOC728024 (Chromosome X Open Reading Frame 56 Pseudogene) is a Pseudogene.

Additional gene information for LOC728024 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC728024 Gene

Genomics for LOC728024 Gene

GeneHancer (GH) Regulatory Elements for LOC728024 Gene

Promoters and enhancers for LOC728024 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J037747 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 500.7 -0.7 -660 2.8 ZBTB40 MXI1 POLR2A NKRF HCFC1 SRF ZNF207 ATF3 NBN SIN3A ENSG00000233170 LOC728024 piR-34219 ADGRA2 RAB11FIP1 ZNF703 ERLIN2 piR-32214-645 RF00017-6955 RF00017-6953
GH08J037754 Enhancer 0.6 Ensembl ENCODE 0.4 -6.8 -6762 0.8 NR2C1 NR2F1 NR2F6 NR2C2 piR-32214-645 LOC728024 lnc-BRF2-2 ERLIN2 RF00017-6955 RF00017-6953
GH08J037753 Enhancer 0.4 ENCODE 0.4 -5.8 -5836 0.9 NR2C1 NR2F1 NR2F6 SP1 NR2C2 ADGRA2 RAB11FIP1 piR-32214-645 LOC728024 lnc-BRF2-2 ERLIN2 RF00017-6955 RF00017-6953
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC728024 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC728024 gene promoter:
  • AP-1
  • COMP1
  • CREB
  • deltaCREB
  • Pbx1a
  • POU3F2
  • POU3F2 (N-Oct-5a)
  • POU3F2 (N-Oct-5b)
  • PPAR-alpha
  • Sox9

Genomic Locations for LOC728024 Gene

Genomic Locations for LOC728024 Gene
chr8:37,746,554-37,748,046
(GRCh38/hg38)
Size:
1,493 bases
Orientation:
Minus strand
chr8:37,604,072-37,605,564
(GRCh37/hg19)
Size:
1,493 bases
Orientation:
Minus strand

Genomic View for LOC728024 Gene

Genes around LOC728024 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC728024 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC728024 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC728024 Gene

Proteins for LOC728024 Gene

Post-translational modifications for LOC728024 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC728024 Gene

Domains & Families for LOC728024 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC728024 Gene

Function for LOC728024 Gene

Phenotypes for LOC728024 Gene

genes like me logo Genes that share phenotypes with LOC728024: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC728024 Gene

Localization for LOC728024 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC728024 Gene

Pathways & Interactions for LOC728024 Gene

PathCards logo

SuperPathways for LOC728024 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC728024 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC728024 Gene

Drugs & Compounds for LOC728024 Gene

No Compound Related Data Available

Transcripts for LOC728024 Gene

mRNA/cDNA for LOC728024 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC728024 Gene

No ASD Table

Relevant External Links for LOC728024 Gene

GeneLoc Exon Structure for
LOC728024

Expression for LOC728024 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC728024 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC728024

SOURCE GeneReport for Unigene cluster for LOC728024 Gene:

Hs.647135
genes like me logo Genes that share expression patterns with LOC728024: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC728024 Gene

Orthologs for LOC728024 Gene

No data available for Orthologs and Evolution for LOC728024 Gene

Paralogs for LOC728024 Gene

No data available for Paralogs for LOC728024 Gene

Variants for LOC728024 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC728024 Gene

Disorders for LOC728024 Gene

No disorders were found for LOC728024 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC728024 Gene

Publications for LOC728024 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 54
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

No data available for Mastermind for LOC728024 Gene

Products for LOC728024 Gene

Sources for LOC728024 Gene