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Aliases for LOC654841 Gene

Subcategory (RNA class) for LOC654841 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC654841 Gene

  • Uncharacterized LOC654841 3
  • AC097662.1 5

External Ids for LOC654841 Gene

Previous GeneCards Identifiers for LOC654841 Gene

  • GC02U900990
  • GC02M228086

Summaries for LOC654841 Gene

GeneCards Summary for LOC654841 Gene

LOC654841 (Uncharacterized LOC654841) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC654841 include Alport Syndrome, Autosomal Dominant and Alport Syndrome, Autosomal Recessive.

Additional gene information for LOC654841 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC654841 Gene

Genomics for LOC654841 Gene

GeneHancer (GH) Regulatory Elements for LOC654841 Gene

Promoters and enhancers for LOC654841 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J227324 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 657.3 -0.7 -740 3.1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 YY1 SLC30A9 MFF LOC654841 IRS1 RHBDD1 STIP1P2
GH02J227370 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 7.5 -45.9 -45908 2.1 STAT1 ETV5 JUND CEBPA ETV4 TCF7 MAFK RUNX3 MFF AGFG1 LOC654841 CCL20 TM4SF20 STIP1P2
GH02J227311 Enhancer 0.7 dbSUPER 5.6 +12.4 12437 3 SOX13 IRF2 FOXA2 ARID4B DMAP1 TEAD3 LCORL PRPF4 CREM MAFK MFF AGFG1 COL4A3 CCL20 LOC654841 GC02P227300
GH02J227376 Enhancer 0.4 ENCODE 4.7 -50.9 -50911 0.1 ATF7 ATF2 AGFG1 LOC654841 TM4SF20 STIP1P2
GH02J227227 Enhancer 0.8 Ensembl ENCODE 0.2 +96.9 96871 0.9 PKNOX1 KLF1 MXI1 MAX KLF17 SIN3A CEBPB MNT ZIC2 SP1 COL4A3 GC02P227300 LOC654841
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC654841 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC654841 Gene

Genomic Locations for LOC654841 Gene
chr2:227,221,052-227,325,201
(GRCh38/hg38)
Size:
104,150 bases
Orientation:
Minus strand

Genomic View for LOC654841 Gene

Genes around LOC654841 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC654841 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC654841 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC654841 Gene

Proteins for LOC654841 Gene

Post-translational modifications for LOC654841 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC654841 Gene

Domains & Families for LOC654841 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC654841 Gene

Function for LOC654841 Gene

Phenotypes From GWAS Catalog for LOC654841 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC654841 Gene

Localization for LOC654841 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC654841 Gene

Pathways & Interactions for LOC654841 Gene

SuperPathways for LOC654841 Gene

No Data Available

Interacting Proteins for LOC654841 Gene

Gene Ontology (GO) - Biological Process for LOC654841 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC654841 Gene

Drugs & Compounds for LOC654841 Gene

No Compound Related Data Available

Transcripts for LOC654841 Gene

mRNA/cDNA for LOC654841 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Unigene Clusters for LOC654841 Gene

Uncharacterized LOC654841:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC654841 Gene

No ASD Table

Relevant External Links for LOC654841 Gene

GeneLoc Exon Structure for
LOC654841

Expression for LOC654841 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC654841 Gene

SOURCE GeneReport for Unigene cluster for LOC654841 Gene:

Hs.659982
genes like me logo Genes that share expression patterns with LOC654841: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC654841 Gene

Orthologs for LOC654841 Gene

Evolution for LOC654841 Gene

ENSEMBL:
Gene Tree for LOC654841 (if available)
TreeFam:
Gene Tree for LOC654841 (if available)

No data available for Orthologs for LOC654841 Gene

Paralogs for LOC654841 Gene

No data available for Paralogs for LOC654841 Gene

Variants for LOC654841 Gene

Sequence variations from dbSNP and Humsavar for LOC654841 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs10178458 benign, not specified, Alport syndrome, Alport syndrome, autosomal dominant, Alport syndrome, autosomal recessive 227,246,719(-) T/C intron_variant
rs10188531 benign, Alport syndrome 227,313,109(-) C/G intron_variant
rs10205042 benign, not specified, Alport syndrome, Alport syndrome, autosomal dominant, Alport syndrome, autosomal recessive 227,263,824(-) C/T intron_variant
rs1057516186 uncertain-significance, Alport syndrome, autosomal dominant 227,294,568(-) C/T intron_variant
rs1057516204 pathogenic, Alport syndrome, autosomal dominant 227,293,219(-) GAAAGAAAG/GAAAG intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC654841 Gene

Variant ID Type Subtype PubMed ID
esv3584367 CNV loss 25503493
esv3594531 CNV loss 21293372
nsv1131556 CNV deletion 24896259
nsv478537 CNV novel sequence insertion 20440878
nsv521800 CNV loss 19592680
nsv584594 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC654841 Gene

Disorders for LOC654841 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LOC654841 Gene - From: GeneCards

Disorder Aliases PubMed IDs
alport syndrome, autosomal dominant
  • autosomal dominant alport syndrome
alport syndrome, autosomal recessive
  • autosomal recessive alport syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC654841

genes like me logo Genes that share disorders with LOC654841: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC654841 Gene

Publications for LOC654841 Gene

  1. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx JJ … Ophoff RA (Molecular psychiatry 2014) 3 58
  2. Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus. (PMID: 23291589) Lu Y … Wong TY (Nature genetics 2013) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC654841 Gene

Sources for LOC654841 Gene

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