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Aliases for LOC653653 Gene
Aliases for LOC653653 Gene
External Ids for LOC653653 Gene
- Entrez Gene: 653653
- Ensembl: ENSG00000280852
Previous GeneCards Identifiers for LOC653653 Gene
- GC17M055533
- GC17M058176
Summaries for LOC653653 Gene
GeneCards Summary for LOC653653 Gene
LOC653653 (Adaptor Related Protein Complex 1 Sigma 2 Subunit Pseudogene) is a Pseudogene.
Additional gene information for LOC653653 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC653653 Gene
Genomics for LOC653653 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC653653 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J060101 | Promoter/Enhancer | 1.5 | Ensembl ENCODE CraniofacialAtlas | 600.7 | +0.4 | 418 | 1.8 | CEBPG PRDM10 ZNF629 IKZF1 BACH1 LARP7 PRDM1 NR2C1 IKZF2 ZNF561 | LOC653653 HEATR6 lnc-HEATR6-1 CA4 | |
| GH17J060093 | Enhancer | 0.8 | FANTOM5 ENCODE dbSUPER | 0.4 | +8.1 | 8112 | 2 | ATF7 EED ATF2 SPI1 IKZF1 | HEATR6 RNFT1 lnc-HEATR6-1 LOC653653 LOC105371849 CA4 | |
| GH17J060119 | Promoter | 0.3 | Ensembl | 0.4 | -16.7 | -16682 | 3.2 | ENSG00000267295 lnc-HEATR6-3 LOC653653 CA4 HEATR6 | ||
| GH17J060115 | Enhancer | 0.3 | Ensembl | 0.4 | -12.6 | -12615 | 2.5 | SMARCA5 | ENSG00000267295 lnc-HEATR6-3 LOC653653 CA4 HEATR6 | |
| GH17J060114 | Enhancer | 0.2 | Ensembl | 0.4 | -11.2 | -11182 | 0.2 | ENSG00000267295 lnc-HEATR6-3 LOC653653 HEATR6 CA4 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC653653 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the LOC653653 gene promoter:
-
- AhR
- Arnt
- FOXD3
- NCX
- Oct-B1
- RREB-1
- Sox5
- Sox9
- STAT5A
Genomic Locations for LOC653653 Gene
Genomic Locations for LOC653653 Gene
- chr17:60,101,759-60,102,919
- (GRCh38/hg38)
- Size:
- 1,161 bases
- Orientation:
- Minus strand
- chr17:58,179,121-58,180,280
- (GRCh37/hg19)
- Size:
- 1,160 bases
- Orientation:
- Minus strand
Genomic View for LOC653653 Gene
Genes around LOC653653 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q23.1 by Entrez Gene
- 17q23.1 by Ensembl
LOC653653 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC653653 Gene
Proteins for LOC653653 Gene
Post-translational modifications for LOC653653 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC653653
- Origene Custom Protein Services for LOC653653
No data available for DME Specific Peptides for LOC653653 Gene
Domains & Families for LOC653653 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC653653 Gene
Function for LOC653653 Gene
Phenotypes for LOC653653 Gene
- GenomeRNAi human phenotypes for LOC653653:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LOC653653
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC653653 Gene
Localization for LOC653653 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC653653 Gene
Transcripts for LOC653653 Gene
mRNA/cDNA for LOC653653 Gene
- 1 NCBI additional mRNA sequence :
- 2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000627667 438 nts (view in UCSC)
- ENST00000634326 1161 nts (view in UCSC)
CRISPR Products
- Browse CRISPR knockouts for LOC653653
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC653653 Gene
- GeneLoc Exon Structure for
- LOC653653
Expression for LOC653653 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC653653
SOURCE GeneReport for Unigene cluster for LOC653653 Gene:
Hs.631741Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC653653 Gene
Orthologs for LOC653653 Gene
No data available for Orthologs for LOC653653 Gene
Paralogs for LOC653653 Gene
No data available for Paralogs for LOC653653 Gene
Variants for LOC653653 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC653653 Gene
Disorders for LOC653653 Gene
No disorders were found for LOC653653 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC653653 Gene
Publications for LOC653653 Gene
No publications were found for LOC653653 Gene.
No data available for Mastermind for LOC653653 Gene
Products for LOC653653 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC653653
- Origene Custom Protein Services for LOC653653
- Browse OriGene Inhibitory RNA Products For LOC653653
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC653653
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC653653
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC653653
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC653653
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC653653
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC653653
Sources for LOC653653 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB