Aliases for LOC653653 Gene

Aliases for LOC653653 Gene

  • Adaptor Related Protein Complex 1 Sigma 2 Subunit Pseudogene 3
  • Adaptor-Related Protein Complex 1, Sigma 2 Subunit (AP1S2) Pseudogene 5
  • AC025048.6 5

External Ids for LOC653653 Gene

Previous GeneCards Identifiers for LOC653653 Gene

  • GC17M055533
  • GC17M058176

Summaries for LOC653653 Gene

GeneCards Summary for LOC653653 Gene

LOC653653 (Adaptor Related Protein Complex 1 Sigma 2 Subunit Pseudogene) is a Pseudogene.

Additional gene information for LOC653653 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC653653 Gene

Genomics for LOC653653 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC653653 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J060101 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 600.7 +0.4 418 1.8 CEBPG PRDM10 ZNF629 IKZF1 BACH1 LARP7 PRDM1 NR2C1 IKZF2 ZNF561 LOC653653 HEATR6 lnc-HEATR6-1 CA4
GH17J060093 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.4 +8.1 8112 2 ATF7 EED ATF2 SPI1 IKZF1 HEATR6 RNFT1 lnc-HEATR6-1 LOC653653 LOC105371849 CA4
GH17J060119 Promoter 0.3 Ensembl 0.4 -16.7 -16682 3.2 ENSG00000267295 lnc-HEATR6-3 LOC653653 CA4 HEATR6
GH17J060115 Enhancer 0.3 Ensembl 0.4 -12.6 -12615 2.5 SMARCA5 ENSG00000267295 lnc-HEATR6-3 LOC653653 CA4 HEATR6
GH17J060114 Enhancer 0.2 Ensembl 0.4 -11.2 -11182 0.2 ENSG00000267295 lnc-HEATR6-3 LOC653653 HEATR6 CA4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC653653 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC653653 gene promoter:
  • AhR
  • Arnt
  • FOXD3
  • NCX
  • Oct-B1
  • RREB-1
  • Sox5
  • Sox9
  • STAT5A

Genomic Locations for LOC653653 Gene

Genomic Locations for LOC653653 Gene
chr17:60,101,759-60,102,919
(GRCh38/hg38)
Size:
1,161 bases
Orientation:
Minus strand
chr17:58,179,121-58,180,280
(GRCh37/hg19)
Size:
1,160 bases
Orientation:
Minus strand

Genomic View for LOC653653 Gene

Genes around LOC653653 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC653653 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC653653 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC653653 Gene

Proteins for LOC653653 Gene

Post-translational modifications for LOC653653 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC653653 Gene

Domains & Families for LOC653653 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC653653 Gene

Function for LOC653653 Gene

Phenotypes for LOC653653 Gene

genes like me logo Genes that share phenotypes with LOC653653: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC653653 Gene

Localization for LOC653653 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC653653 Gene

Pathways & Interactions for LOC653653 Gene

PathCards logo

SuperPathways for LOC653653 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC653653 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC653653 Gene

Drugs & Compounds for LOC653653 Gene

No Compound Related Data Available

Transcripts for LOC653653 Gene

mRNA/cDNA for LOC653653 Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC653653 Gene

No ASD Table

Relevant External Links for LOC653653 Gene

GeneLoc Exon Structure for
LOC653653

Expression for LOC653653 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC653653 Gene

mRNA expression in normal human tissues for LOC653653 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC653653

SOURCE GeneReport for Unigene cluster for LOC653653 Gene:

Hs.631741
genes like me logo Genes that share expression patterns with LOC653653: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC653653 Gene

Orthologs for LOC653653 Gene

Evolution for LOC653653 Gene

ENSEMBL:
Gene Tree for LOC653653 (if available)
TreeFam:
Gene Tree for LOC653653 (if available)

No data available for Orthologs for LOC653653 Gene

Paralogs for LOC653653 Gene

No data available for Paralogs for LOC653653 Gene

Variants for LOC653653 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC653653 Gene

Variant ID Type Subtype PubMed ID
esv23747 CNV gain 19812545
nsv499622 OTHER inversion 21111241
nsv7295 OTHER inversion 18451855
nsv828073 CNV gain 20364138
nsv833504 CNV gain 17160897
nsv9579 CNV gain+loss 18304495
nsv960510 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC653653 Gene

Disorders for LOC653653 Gene

No disorders were found for LOC653653 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC653653 Gene

Publications for LOC653653 Gene

No publications were found for LOC653653 Gene.

No data available for Mastermind for LOC653653 Gene

Products for LOC653653 Gene

Sources for LOC653653 Gene