Aliases for LOC653513 Gene

Aliases for LOC653513 Gene

  • Phosphodiesterase 4D Interacting Protein-Like 3

External Ids for LOC653513 Gene

Previous GeneCards Identifiers for LOC653513 Gene

  • GC01M143387
  • GC01M144677
  • GC01M149199
  • GC01M149200

Summaries for LOC653513 Gene

GeneCards Summary for LOC653513 Gene

LOC653513 (Phosphodiesterase 4D Interacting Protein-Like) is a Pseudogene.

Additional gene information for LOC653513 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC653513 Gene

Genomics for LOC653513 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC653513 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J149200 Enhancer 0.2 Ensembl 600.7 +0.0 45 1.8 LOC653513 MN296854-003 ENSG00000274265 NBPF9 ENSG00000215861 NOTCH2NLC
GH01J149196 Enhancer 0.2 Ensembl 0.7 +4.1 4146 0.8 MN296854-003 MN296855-002 LOC653513 ENSG00000274265 NBPF9 NOTCH2NLC
GH01J149198 Enhancer 0.2 Ensembl 0.7 +2.7 2745 0.4 MN296854-003 LOC653513 ENSG00000274265 NBPF9 ENSG00000215861 NOTCH2NLC
GH01J149211 Enhancer 0.2 Ensembl 0.4 -10.9 -10855 6.4 piR-45586-004 LOC653513 ENSG00000274265 ENSG00000215861 NBPF9 NOTCH2NLC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC653513 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC653513 gene promoter:
  • AP-4
  • AREB6
  • Brachyury
  • CP2
  • FOXL1
  • S8
  • STAT1
  • STAT1alpha
  • STAT1beta
  • TBP

Genomic Locations for LOC653513 Gene

Genomic Locations for LOC653513 Gene
chr1:149,197,559-149,201,146
(GRCh38/hg38)
Size:
3,588 bases
Orientation:
Minus strand
chr1:144,676,437-144,680,025
(GRCh37/hg19)
Size:
3,589 bases
Orientation:
Minus strand

Genomic View for LOC653513 Gene

Genes around LOC653513 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC653513 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC653513 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC653513 Gene

Proteins for LOC653513 Gene

Post-translational modifications for LOC653513 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC653513 Gene

Domains & Families for LOC653513 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC653513 Gene

Function for LOC653513 Gene

Phenotypes for LOC653513 Gene

genes like me logo Genes that share phenotypes with LOC653513: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC653513 Gene

Localization for LOC653513 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC653513 Gene

Pathways & Interactions for LOC653513 Gene

PathCards logo

SuperPathways for LOC653513 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC653513 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC653513 Gene

Drugs & Compounds for LOC653513 Gene

No Compound Related Data Available

Transcripts for LOC653513 Gene

mRNA/cDNA for LOC653513 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC653513 Gene

No ASD Table

Relevant External Links for LOC653513 Gene

GeneLoc Exon Structure for
LOC653513

Expression for LOC653513 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC653513 Gene

mRNA differential expression in normal tissues according to GTEx for LOC653513 Gene

This gene is overexpressed in Muscle - Skeletal (x15.5), Heart - Left Ventricle (x11.5), and Heart - Atrial Appendage (x7.1).

SOURCE GeneReport for Unigene cluster for LOC653513 Gene:

Hs.632434
genes like me logo Genes that share expression patterns with LOC653513: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC653513 Gene

Orthologs for LOC653513 Gene

No data available for Orthologs and Evolution for LOC653513 Gene

Paralogs for LOC653513 Gene

No data available for Paralogs for LOC653513 Gene

Variants for LOC653513 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC653513 Gene

Variant ID Type Subtype PubMed ID
dgv199e59 CNV duplication 20981092
dgv319n100 CNV loss 25217958
dgv320n100 CNV gain 25217958
dgv321n100 CNV gain 25217958
dgv322n100 CNV loss 25217958
dgv323n100 CNV gain 25217958
dgv324n100 CNV gain 25217958
dgv325n100 CNV gain 25217958
dgv66e199 CNV deletion 23128226
dgv70n67 CNV gain 20364138
dgv90e212 CNV gain 25503493
dgv91e212 CNV gain 25503493
dgv92e212 CNV gain 25503493
esv2391656 CNV deletion 18987734
esv2455158 CNV gain 19546169
esv27392 CNV gain 19812545
esv2762189 CNV gain 21179565
esv32934 CNV gain+loss 17666407
esv3360116 CNV duplication 20981092
esv3380599 CNV duplication 20981092
esv3387252 CNV duplication 20981092
esv3570675 CNV gain 25503493
esv3587404 CNV loss 21293372
esv7052 CNV loss 19470904
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1005230 CNV gain 25217958
nsv1076338 CNV duplication 25765185
nsv1113168 CNV deletion 24896259
nsv1132304 CNV duplication 24896259
nsv1139498 CNV duplication 24896259
nsv1140265 OTHER inversion 24896259
nsv1151226 CNV duplication 26484159
nsv1152455 CNV duplication 26484159
nsv1161492 CNV deletion 26073780
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv8069 CNV gain 18304495
nsv819024 CNV gain 19587683
nsv821349 CNV duplication 20802225
nsv821620 CNV loss 15273396
nsv824365 CNV gain 20364138
nsv831315 CNV loss 17160897
nsv946250 CNV duplication 23825009
nsv946952 CNV duplication 23825009
nsv950944 CNV duplication 24416366
nsv957525 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC653513 Gene

Disorders for LOC653513 Gene

No disorders were found for LOC653513 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC653513 Gene

Publications for LOC653513 Gene

No publications were found for LOC653513 Gene.

No data available for Mastermind for LOC653513 Gene

Products for LOC653513 Gene

Sources for LOC653513 Gene