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Aliases for LOC652276 Gene

Aliases for LOC652276 Gene

  • Potassium Channel Tetramerization Domain Containing 5 Pseudogene 3
  • Potassium Channel Tetramerisation Domain Containing 5 Pseudogene 3

External Ids for LOC652276 Gene

Previous GeneCards Identifiers for LOC652276 Gene

  • GC16P002596
  • GC16P002654
  • GC16P002658
  • GC16P002663
  • GC16P002667
  • GC16P002675
  • GC16P002637
  • GC16P002710
  • GC16P003643
  • GC16P002719
  • GC16P002758
  • GC16P002797
  • GC16P002861
  • GC16P002906
  • GC16P002947
  • GC16P003005
  • GC16P003530

Summaries for LOC652276 Gene

GeneCards Summary for LOC652276 Gene

LOC652276 (Potassium Channel Tetramerization Domain Containing 5 Pseudogene) is a Pseudogene.

Additional gene information for LOC652276 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC652276 Gene

Genomics for LOC652276 Gene

GeneHancer (GH) Regulatory Elements for LOC652276 Gene

Promoters and enhancers for LOC652276 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J002602 Promoter/Enhancer 2.2 UCNEbase Ensembl ENCODE dbSUPER 600.7 +0.7 717 3 SP1 ELF3 ZFX MNT SIX5 CBFA2T2 ZNF148 NKRF POLR2A MLLT1 PIR62164 LOC652276 ENSG00000215154 TIGD7 TBL3 ZNF597 CLUAP1 AMDHD2 IFT140 SRRM2
GH16J002607 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.7 +4.0 4044 2.1 ZNF121 ZNF687 MLLT1 IKZF1 ZNF600 PRDM10 IKZF2 ZNF629 PATZ1 OSR2 ERVK13-1 ENSG00000215154 LOC652276 GC16M002615
GH16J002611 Enhancer 0.4 dbSUPER 0.4 +9.0 8991 2.6 POLR2A SSRP1 GC16M002615 ENSG00000261613 TBC1D24 ERVK13-1 ENSG00000279057 LOC652276 ENSG00000215154
GH16J002618 Enhancer 0.2 dbSUPER 0.4 +16.1 16084 2.6 ENSG00000279057 GC16M002615 ENSG00000215154 LOC652276 PDPK2P
GH16J002622 Enhancer 0.2 dbSUPER 0.3 +20.9 20938 3.8 GC16M002622 ENSG00000260176 ENSG00000279057 PDPK2P LOC652276 ENSG00000215154
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC652276 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC652276 gene promoter:
  • aMEF-2
  • FOXC1
  • IRF-1
  • ITF-2
  • MEF-2
  • MEF-2A
  • Pax-5
  • RelA
  • Tal-1beta

Genomic Locations for LOC652276 Gene

Genomic Locations for LOC652276 Gene
chr16:2,603,384-2,630,494
(GRCh38/hg38)
Size:
27,111 bases
Orientation:
Plus strand
chr16:2,653,351-2,680,495
(GRCh37/hg19)
Size:
27,145 bases
Orientation:
Plus strand

Genomic View for LOC652276 Gene

Genes around LOC652276 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC652276 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC652276 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC652276 Gene

Proteins for LOC652276 Gene

Post-translational modifications for LOC652276 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC652276 Gene

Domains & Families for LOC652276 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC652276 Gene

Function for LOC652276 Gene

Phenotypes From GWAS Catalog for LOC652276 Gene

Phenotypes for LOC652276 Gene

GenomeRNAi human phenotypes for LOC652276:
genes like me logo Genes that share phenotypes with LOC652276: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC652276 Gene

Localization for LOC652276 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC652276 Gene

Pathways & Interactions for LOC652276 Gene

PathCards logo

SuperPathways for LOC652276 Gene

No Data Available

Interacting Proteins for LOC652276 Gene

Gene Ontology (GO) - Biological Process for LOC652276 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC652276 Gene

Drugs & Compounds for LOC652276 Gene

No Compound Related Data Available

Transcripts for LOC652276 Gene

mRNA/cDNA for LOC652276 Gene

(11) Additional mRNA sequences :

Unigene Clusters for LOC652276 Gene

Potassium channel tetramerisation domain containing 5 pseudogene:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC652276 Gene

No ASD Table

Relevant External Links for LOC652276 Gene

GeneLoc Exon Structure for
LOC652276

Expression for LOC652276 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC652276 Gene

SOURCE GeneReport for Unigene cluster for LOC652276 Gene:

Hs.720448
genes like me logo Genes that share expression patterns with LOC652276: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC652276 Gene

Orthologs for LOC652276 Gene

No data available for Orthologs and Evolution for LOC652276 Gene

Paralogs for LOC652276 Gene

No data available for Paralogs for LOC652276 Gene

Variants for LOC652276 Gene

Sequence variations from dbSNP and Humsavar for LOC652276 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000232434 -- 2,601,522(+) C/G/T upstream_transcript_variant
rs1000371477 -- 2,611,433(+) A/C intron_variant
rs1001054613 -- 2,622,531(+) A/G intron_variant
rs1001539127 -- 2,604,992(+) G/C intron_variant
rs1001687716 -- 2,610,904(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC652276 Gene

Variant ID Type Subtype PubMed ID
dgv110n111 CNV duplication 26073780
dgv2693n100 CNV gain 25217958
dgv780e212 CNV gain 25503493
esv2421848 CNV duplication 20811451
esv2422427 CNV duplication 17116639
esv2658604 CNV deletion 23128226
esv2750386 CNV deletion 23290073
esv2760067 CNV gain+loss 17122850
esv2762199 CNV gain+loss 21179565
esv2763126 CNV gain 21179565
esv29849 CNV gain+loss 19812545
esv33514 CNV gain+loss 17666407
esv3637634 CNV gain 21293372
esv3892757 CNV gain 25118596
esv8446 CNV loss 19470904
nsv1037150 CNV gain 25217958
nsv1052260 CNV gain 25217958
nsv1140247 OTHER inversion 24896259
nsv1143805 CNV deletion 24896259
nsv1147919 CNV duplication 26484159
nsv510672 CNV deletion 20534489
nsv571214 CNV gain 21841781
nsv571215 CNV loss 21841781
nsv7275 OTHER inversion 18451855
nsv827518 CNV gain 20364138
nsv827519 CNV gain 20364138
nsv833122 CNV loss 17160897
nsv833123 CNV gain+loss 17160897
nsv9334 CNV loss 18304495
nsv952904 CNV deletion 24416366
nsv958038 CNV deletion 24416366
nsv977896 CNV duplication 23825009
nsv977897 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC652276 Gene

Disorders for LOC652276 Gene

No disorders were found for LOC652276 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC652276 Gene

Publications for LOC652276 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC652276 Gene

Products for LOC652276 Gene

Sources for LOC652276 Gene

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