Aliases for LOC650293 Gene

Aliases for LOC650293 Gene

  • Seven Transmembrane Helix Receptor 3

External Ids for LOC650293 Gene

Previous GeneCards Identifiers for LOC650293 Gene

  • GC03M131224
  • GC04U900704

Summaries for LOC650293 Gene

GeneCards Summary for LOC650293 Gene

LOC650293 (Seven Transmembrane Helix Receptor) is a Pseudogene.

Additional gene information for LOC650293 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC650293 Gene

Genomics for LOC650293 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC650293 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J008544 Enhancer 0.9 FANTOM5 Ensembl ENCODE dbSUPER 3.9 -404.5 -404482 1.8 KDM1A ZNF623 BCOR ZMYM3 TRMT44 ENSG00000251186 ENSG00000205959 LOC650293 GPR78 MG828665 lnc-ACOX3-6 ACOX3
GH04J008910 Enhancer 0.2 FANTOM5 2.8 -38.6 -38625 0.1 piR-32214-509 piR-57340 LOC650293 HMX1 FAM90A26
GH04J008939 Enhancer 0.3 Ensembl 0.4 -10.1 -10103 0.6 ZNF341 KLF1 LOC650293 piR-57460-500 HMX1 FAM90A26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC650293 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC650293 Gene

Genomic Locations for LOC650293 Gene
chr4:8,949,604-8,950,620
(GRCh38/hg38)
Size:
1,017 bases
Orientation:
Plus strand
chr4:8,951,356-8,952,285
(GRCh37/hg19)
Size:
930 bases
Orientation:
Plus strand

Genomic View for LOC650293 Gene

Genes around LOC650293 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC650293 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC650293 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC650293 Gene

Proteins for LOC650293 Gene

Post-translational modifications for LOC650293 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC650293 Gene

Domains & Families for LOC650293 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC650293 Gene

Function for LOC650293 Gene

Phenotypes From GWAS Catalog for LOC650293 Gene

genes like me logo Genes that share phenotypes with LOC650293: view

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC650293

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC650293 Gene

Localization for LOC650293 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC650293 Gene

Pathways & Interactions for LOC650293 Gene

PathCards logo

SuperPathways for LOC650293 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC650293 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC650293 Gene

Drugs & Compounds for LOC650293 Gene

No Compound Related Data Available

Transcripts for LOC650293 Gene

mRNA/cDNA for LOC650293 Gene

1 REFSEQ mRNAs :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC650293

Alternative Splicing Database (ASD) splice patterns (SP) for LOC650293 Gene

No ASD Table

Relevant External Links for LOC650293 Gene

GeneLoc Exon Structure for
LOC650293

Expression for LOC650293 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC650293 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC650293

SOURCE GeneReport for Unigene cluster for LOC650293 Gene:

Hs.535167
genes like me logo Genes that share expression patterns with LOC650293: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC650293 Gene

Orthologs for LOC650293 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC650293 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC100610201 30
  • 95.52 (n)
Species where no ortholog for LOC650293 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

No data available for Evolution for LOC650293 Gene

Paralogs for LOC650293 Gene

No data available for Paralogs for LOC650293 Gene

Variants for LOC650293 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC650293 Gene

Variant ID Type Subtype PubMed ID
esv2759222 CNV gain+loss 17122850
esv2763860 CNV gain+loss 21179565
esv34196 OTHER inversion 12058347
nsv1005698 CNV gain 25217958
nsv428437 CNV gain 18775914

Additional Variant Information for LOC650293 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LOC650293

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for LOC650293 Gene

Disorders for LOC650293 Gene

Additional Disease Information for LOC650293

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for LOC650293 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC650293 Gene

Publications for LOC650293 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 41

No data available for Mastermind for LOC650293 Gene

Products for LOC650293 Gene

Sources for LOC650293 Gene