Aliases for LOC646999 Gene

Aliases for LOC646999 Gene

  • Akirin 1 Pseudogene 3

External Ids for LOC646999 Gene

Previous GeneCards Identifiers for LOC646999 Gene

  • GC07P039615
  • GC07U902532
  • GC07P039686
  • GC07P039650

Summaries for LOC646999 Gene

GeneCards Summary for LOC646999 Gene

LOC646999 (Akirin 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC646999 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646999 Gene

Genomics for LOC646999 Gene

GeneHancer (GH) Regulatory Elements for LOC646999 Gene

Promoters and enhancers for LOC646999 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J039607 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 500.7 -0.3 -264 4.5 JUND EP300 CTCF NFIC GATA3 GABPA PHF8 SPI1 E2F6 TAL1 ENSG00000106540 ENSG00000231951 LOC646999 NONHSAG047400.2 YAE1 ENSG00000227172 RALA lnc-RALA-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646999 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC646999 gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • FOXO4
  • GR
  • MEF-2A
  • NF-kappaB
  • NF-kappaB1
  • p53

Genomic Locations for LOC646999 Gene

Genomic Locations for LOC646999 Gene
chr7:39,609,628-39,612,109
(GRCh38/hg38)
Size:
2,482 bases
Orientation:
Plus strand
chr7:39,649,086-39,651,687
(GRCh37/hg19)
Size:
2,602 bases
Orientation:
Plus strand

Genomic View for LOC646999 Gene

Genes around LOC646999 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646999 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646999 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646999 Gene

Proteins for LOC646999 Gene

Post-translational modifications for LOC646999 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646999 Gene

Domains & Families for LOC646999 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646999 Gene

Function for LOC646999 Gene

Phenotypes for LOC646999 Gene

genes like me logo Genes that share phenotypes with LOC646999: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646999 Gene

Localization for LOC646999 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646999 Gene

Pathways & Interactions for LOC646999 Gene

PathCards logo

SuperPathways for LOC646999 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC646999 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC646999 Gene

Drugs & Compounds for LOC646999 Gene

No Compound Related Data Available

Transcripts for LOC646999 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646999 Gene

No ASD Table

Relevant External Links for LOC646999 Gene

GeneLoc Exon Structure for
LOC646999

No data available for mRNA/cDNA for LOC646999 Gene

Expression for LOC646999 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC646999 Gene

mRNA expression in normal human tissues for LOC646999 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC646999

SOURCE GeneReport for Unigene cluster for LOC646999 Gene:

Hs.72168
genes like me logo Genes that share expression patterns with LOC646999: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646999 Gene

Orthologs for LOC646999 Gene

No data available for Orthologs and Evolution for LOC646999 Gene

Paralogs for LOC646999 Gene

No data available for Paralogs for LOC646999 Gene

Variants for LOC646999 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646999 Gene

Disorders for LOC646999 Gene

No disorders were found for LOC646999 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646999 Gene

Publications for LOC646999 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC646999 Gene

Products for LOC646999 Gene

Sources for LOC646999 Gene