Aliases for LOC646976 Gene

Subcategory (RNA class) for LOC646976 Gene

ncRNA

Aliases for LOC646976 Gene

  • Translation Initiation Factor IF-2 3

External Ids for LOC646976 Gene

Previous GeneCards Identifiers for LOC646976 Gene

  • GC01M176960
  • GC01M178693
  • GC01U903099

Summaries for LOC646976 Gene

GeneCards Summary for LOC646976 Gene

LOC646976 (Translation Initiation Factor IF-2) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC646976 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646976 Gene

Genomics for LOC646976 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC646976 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J178724 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.3 3332 4.4 CREB1 GATAD2A PRDM10 ZNF629 IKZF1 JUND FOXA1 LARP7 PRDM1 RBFOX2 ENSG00000273062 RALGPS2 MF281487 ENSG00000201791 ANGPTL1 TDRD5 LOC646976
GH01J178739 Enhancer 0.7 Ensembl dbSUPER 0.4 -9.5 -9546 1 CEBPB NR3C1 ZNF316 MAFF MAFK MAFG BHLHE40 TAL1 CBFA2T3 EMSY C1orf220 LOC646976 lnc-ANGPTL1-2 RALGPS2 ANGPTL1
GH01J178743 Enhancer 0.5 Ensembl dbSUPER 0.4 -14.1 -14051 0.8 ZNF316 ATF2 lnc-ANGPTL1-2 LOC646976 RALGPS2 ANGPTL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646976 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC646976 gene promoter:
  • AML1a
  • C/EBPalpha
  • Gfi-1
  • HEN1
  • HOXA9
  • HOXA9B
  • Ik-2
  • Meis-1
  • Meis-1a
  • Pbx1a

Genomic Locations for LOC646976 Gene

Genomic Locations for LOC646976 Gene
chr1:178,724,251-178,729,931
(GRCh38/hg38)
Size:
5,681 bases
Orientation:
Minus strand
chr1:178,693,441-178,695,420
(GRCh37/hg19)
Size:
1,980 bases
Orientation:
Minus strand

Genomic View for LOC646976 Gene

Genes around LOC646976 on UCSC Golden Path with GeneCards custom track
LOC646976 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC646976 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646976 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646976 Gene

Proteins for LOC646976 Gene

Post-translational modifications for LOC646976 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646976 Gene

Domains & Families for LOC646976 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646976 Gene

Function for LOC646976 Gene

Phenotypes for LOC646976 Gene

genes like me logo Genes that share phenotypes with LOC646976: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646976 Gene

Localization for LOC646976 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646976 Gene

Pathways & Interactions for LOC646976 Gene

PathCards logo

SuperPathways for LOC646976 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC646976 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC646976 Gene

Drugs & Compounds for LOC646976 Gene

No Compound Related Data Available

Transcripts for LOC646976 Gene

LOC646976 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

mRNA/cDNA for LOC646976 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646976 Gene

No ASD Table

Relevant External Links for LOC646976 Gene

GeneLoc Exon Structure for
LOC646976

Expression for LOC646976 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC646976

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646976 Gene

Orthologs for LOC646976 Gene

No data available for Orthologs and Evolution for LOC646976 Gene

Paralogs for LOC646976 Gene

No data available for Paralogs for LOC646976 Gene

Variants for LOC646976 Gene

Additional dbSNP identifiers (rs#s) for LOC646976 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646976 Gene

Disorders for LOC646976 Gene

No disorders were found for LOC646976 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646976 Gene

Publications for LOC646976 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC646976 Gene

Products for LOC646976 Gene

Sources for LOC646976 Gene