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Aliases for LOC646870 Gene

Aliases for LOC646870 Gene

  • Centrosomal Protein 57kDa Pseudogene 3
  • AL645568.2 5

External Ids for LOC646870 Gene

Previous GeneCards Identifiers for LOC646870 Gene

  • GC01M171653
  • GC01M171599

Summaries for LOC646870 Gene

GeneCards Summary for LOC646870 Gene

LOC646870 (Centrosomal Protein 57kDa Pseudogene) is a Pseudogene.

Additional gene information for LOC646870 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC646870 Gene

Genomics for LOC646870 Gene

GeneHancer (GH) Regulatory Elements for LOC646870 Gene

Promoters and enhancers for LOC646870 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I173354 Enhancer 0.9 ENCODE 5.6 +8.5 8507 1 SMAD1 ATF1 ARNT TCF12 ZNF766 GATA2 FOS ATF7 RUNX3 NCOA1 LOC646870 GC01P173351 GC01M173362 LOC100506023
GH01I173409 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -46.5 -46509 2.6 HDGF PKNOX1 RB1 BATF KLF5 IRF4 ZNF143 ATF7 ETV6 BCLAF1 KLHL20 CENPL DARS2 PRDX6 ENSG00000224228 TNFSF4 GC01M173428 LOC646870 LOC100506023
GH01I173406 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 -43.5 -43480 1.5 HDGF IRF2 ZFP37 JUNB EBF1 IKZF1 MLLT1 IKZF2 ENSG00000224228 KLHL20 ANKRD45 GC01M173428 LOC646870 LOC100506023
GH01I173405 Enhancer 1 ENCODE dbSUPER 0.3 -42.2 -42215 0.4 MXI1 JUN MAX CEBPG BATF IRF4 RAD21 BRCA1 FOSL1 ZFHX2 ENSG00000224228 KLHL20 GC01M173428 LOC646870 LOC100506023
GH01I173392 Enhancer 1 Ensembl ENCODE 0.3 -29.4 -29427 1.2 HDAC1 ATF1 PKNOX1 RAD21 RFX5 TCF12 CBX5 GATA2 RCOR1 FOS LOC646870 GC01M173428 LOC100506023
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC646870 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC646870 gene promoter:

Genomic Locations for LOC646870 Gene

Genomic Locations for LOC646870 Gene
chr1:173,362,378-173,363,890
(GRCh38/hg38)
Size:
1,513 bases
Orientation:
Minus strand
chr1:173,331,517-173,333,029
(GRCh37/hg19)

Genomic View for LOC646870 Gene

Genes around LOC646870 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646870 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646870 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646870 Gene

Proteins for LOC646870 Gene

Post-translational modifications for LOC646870 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646870 Gene

Domains & Families for LOC646870 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC646870 Gene

Function for LOC646870 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646870 Gene

Localization for LOC646870 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646870 Gene

Pathways & Interactions for LOC646870 Gene

SuperPathways for LOC646870 Gene

No Data Available

Interacting Proteins for LOC646870 Gene

Gene Ontology (GO) - Biological Process for LOC646870 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646870 Gene

Drugs & Compounds for LOC646870 Gene

No Compound Related Data Available

Transcripts for LOC646870 Gene

mRNA/cDNA for LOC646870 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646870 Gene

No ASD Table

Relevant External Links for LOC646870 Gene

GeneLoc Exon Structure for
LOC646870

Expression for LOC646870 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC646870 Gene

genes like me logo Genes that share expression patterns with LOC646870: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646870 Gene

Orthologs for LOC646870 Gene

Evolution for LOC646870 Gene

ENSEMBL:
Gene Tree for LOC646870 (if available)
TreeFam:
Gene Tree for LOC646870 (if available)

No data available for Orthologs for LOC646870 Gene

Paralogs for LOC646870 Gene

No data available for Paralogs for LOC646870 Gene

Variants for LOC646870 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646870 Gene

Disorders for LOC646870 Gene

No disorders were found for LOC646870 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646870 Gene

Publications for LOC646870 Gene

No publications were found for LOC646870 Gene.

Products for LOC646870 Gene

Sources for LOC646870 Gene

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