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Aliases for LOC646828 Gene

Aliases for LOC646828 Gene

  • Carbonic Anhydrase 5A Pseudogene 3
  • Mitochondrial Carbonic Anhydrase VA Pseudogene 3

External Ids for LOC646828 Gene

Previous GeneCards Identifiers for LOC646828 Gene

  • GC16M021452
  • GC16M021454

Summaries for LOC646828 Gene

GeneCards Summary for LOC646828 Gene

LOC646828 (Carbonic Anhydrase 5A Pseudogene) is a Pseudogene.

Additional gene information for LOC646828 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC646828 Gene

Genomics for LOC646828 Gene

GeneHancer (GH) Regulatory Elements for LOC646828 Gene

Promoters and enhancers for LOC646828 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J021549 Enhancer 0.5 Ensembl dbSUPER 600.7 +2.0 1975 2 ZBTB33 ENSG00000257639 LOC646828 ENSG00000271609
GH16J021550 Enhancer 0.4 Ensembl dbSUPER 600.7 +0.2 185 1.2 ENSG00000257639 LOC646828 ENSG00000271609
GH16J021554 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 0.7 -4.7 -4718 0.8 ZNF652 SP1 CC2D1A CTCF ELF3 MNT MLLT1 ZNF121 CEBPG AHR DNAH3 GC16P021558 LOC646828
GH16J021540 Promoter/Enhancer 1.2 Ensembl ENCODE 0.4 +8.9 8895 1.4 MNT NKRF MLLT1 IKZF1 ZBTB33 ZNF24 IKZF2 LARP7 TRIM22 PKNOX1 METTL9 ENSG00000271609 LOC646828 ENSG00000257639
GH16J021535 Enhancer 1 Ensembl dbSUPER 0.4 +13.7 13665 1.3 CC2D1A CBFA2T2 GTF2F1 TRIM24 SMARCA4 GMEB1 DPF2 IKZF1 ZNF512 ATF1 ENSG00000271609 ENSG00000273956 LOC646828 ENSG00000257639
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646828 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC646828 Gene

Genomic Locations for LOC646828 Gene
chr16:21,532,885-21,550,376
(GRCh38/hg38)
Size:
17,492 bases
Orientation:
Minus strand
chr16:21,544,206-21,561,697
(GRCh37/hg19)
Size:
17,492 bases
Orientation:
Minus strand

Genomic View for LOC646828 Gene

Genes around LOC646828 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646828 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646828 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646828 Gene

Proteins for LOC646828 Gene

Post-translational modifications for LOC646828 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646828 Gene

Domains & Families for LOC646828 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC646828 Gene

Function for LOC646828 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646828 Gene

Localization for LOC646828 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646828 Gene

Pathways & Interactions for LOC646828 Gene

PathCards logo

SuperPathways for LOC646828 Gene

No Data Available

Interacting Proteins for LOC646828 Gene

Gene Ontology (GO) - Biological Process for LOC646828 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646828 Gene

Drugs & Compounds for LOC646828 Gene

No Compound Related Data Available

Transcripts for LOC646828 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646828 Gene

No ASD Table

Relevant External Links for LOC646828 Gene

GeneLoc Exon Structure for
LOC646828

No data available for mRNA/cDNA for LOC646828 Gene

Expression for LOC646828 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC646828 Gene

genes like me logo Genes that share expression patterns with LOC646828: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646828 Gene

Orthologs for LOC646828 Gene

No data available for Orthologs and Evolution for LOC646828 Gene

Paralogs for LOC646828 Gene

No data available for Paralogs for LOC646828 Gene

Variants for LOC646828 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646828 Gene

Disorders for LOC646828 Gene

No disorders were found for LOC646828 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646828 Gene

Publications for LOC646828 Gene

  1. Finishing the euchromatic sequence of the human genome. (PMID: 15496913) International Human Genome Sequencing Consortium (Nature 2004) 3 58
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 58
  3. Initial sequencing and analysis of the human genome. (PMID: 11237011) Lander ES … International Human Genome Sequencing Consortium (Nature 2001) 3 58

No data available for External Links for LOC646828 Gene

Products for LOC646828 Gene

Sources for LOC646828 Gene

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