Aliases for LOC646736 Gene

Subcategory (RNA class) for LOC646736 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC646736 Gene

  • Uncharacterized LOC646736 3
  • NONHSAG030680.2 91
  • HSALNG0022687 164
  • Lnc-NYAP2-5 165

External Ids for LOC646736 Gene

Previous GeneCards Identifiers for LOC646736 Gene

  • GC02P226715
  • GC02U901574

Summaries for LOC646736 Gene

GeneCards Summary for LOC646736 Gene

LOC646736 (Uncharacterized LOC646736) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC646736 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646736 Gene

Genomics for LOC646736 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC646736 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J226142 Enhancer 0.3 Ensembl 600.7 +0.0 7 0.8 ZSCAN9 LOC646736 ENSG00000235070 IRS1 NYAP2
GH02J226153 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +14.7 14661 8.7 GATAD2A TEAD4 TFE3 SOX13 RCOR2 RBFOX2 POLR2A RXRB SP1 GABPA ENSG00000235070 IRS1 LOC646736 NYAP2
GH02J226113 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -21.5 -21527 15.5 CEBPG CREB1 GATAD2A ATF7 SOX13 RCOR2 ZNF7 TARDBP ZHX2 FOXA1 lnc-NYAP2-11 LOC646736 ENSG00000235070 IRS1 NYAP2
GH02J226138 Enhancer 0.8 dbSUPER 0.7 -3.1 -3143 2.2 GATAD2A ZNF7 RXRB IRF2 CEBPA SOX13 ZKSCAN8 KAT7 ZBTB25 TEAD1 ENSG00000235070 LOC646736 lnc-NYAP2-11 NYAP2 IRS1
GH02J226135 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 -5.8 -5784 2.7 CREB1 ATF7 JUND CEBPB U2AF2 FOXA2 MAFF MAFK TEAD1 FOSL2 ENSG00000235070 LOC646736 lnc-NYAP2-11 NYAP2 IRS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646736 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC646736 Gene

Genomic Locations for LOC646736 Gene
chr2:226,142,794-226,181,765
(GRCh38/hg38)
Size:
38,972 bases
Orientation:
Plus strand

Genomic View for LOC646736 Gene

Genes around LOC646736 on UCSC Golden Path with GeneCards custom track
LOC646736 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC646736 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646736 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646736 Gene

Proteins for LOC646736 Gene

Post-translational modifications for LOC646736 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646736 Gene

Domains & Families for LOC646736 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646736 Gene

Function for LOC646736 Gene

Phenotypes From GWAS Catalog for LOC646736 Gene

Phenotypes for LOC646736 Gene

genes like me logo Genes that share phenotypes with LOC646736: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646736 Gene

Localization for LOC646736 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646736 Gene

Pathways & Interactions for LOC646736 Gene

PathCards logo

SuperPathways for LOC646736 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC646736 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC646736 Gene

Drugs & Compounds for LOC646736 Gene

No Compound Related Data Available

Transcripts for LOC646736 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC646736 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DB7D_9606 lncRNA 935 3

RefSeq: NR_046102,

LNCipedia: lnc-NYAP2-5:1,

NONCODE: NONHSAT077183.2,

URS0000D5E250_9606 lncRNA 2251 2

LncBook: HSALNT0048103,

LNCipedia: lnc-NYAP2-5:4,

URS0000D5AADF_9606 lncRNA 2103 2

LncBook: HSALNT0048105,

LNCipedia: lnc-NYAP2-5:6,

URS0000D5785A_9606 lncRNA 287 2

LncBook: HSALNT0048102,

LNCipedia: lnc-NYAP2-5:2,

URS0000D5798B_9606 lncRNA 1070 1

LNCipedia: lnc-NYAP2-5:3,

LOC646736 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC646736 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646736 Gene

No ASD Table

Relevant External Links for LOC646736 Gene

GeneLoc Exon Structure for
LOC646736

Expression for LOC646736 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC646736

SOURCE GeneReport for Unigene cluster for LOC646736 Gene:

Hs.712836
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646736 Gene

Orthologs for LOC646736 Gene

No data available for Orthologs and Evolution for LOC646736 Gene

Paralogs for LOC646736 Gene

No data available for Paralogs for LOC646736 Gene

Variants for LOC646736 Gene

Additional dbSNP identifiers (rs#s) for LOC646736 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC646736 Gene

Variant ID Type Subtype PubMed ID
dgv2161n106 CNV deletion 24896259
esv2278504 CNV deletion 18987734
esv2721541 CNV deletion 23290073
esv3561084 CNV deletion 23714750
esv3584365 CNV loss 25503493
nsv1072075 CNV deletion 25765185
nsv1149501 CNV deletion 26484159
nsv214476 CNV deletion 16902084
nsv525291 CNV gain 19592680
nsv584559 CNV loss 21841781
nsv954187 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC646736 Gene

Disorders for LOC646736 Gene

No disorders were found for LOC646736 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646736 Gene

Publications for LOC646736 Gene

  1. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight BF … GIANT Consortium (Nature genetics 2010) 3
  2. Genomewide association analysis of coronary artery disease. (PMID: 17634449) Samani NJ … WTCCC and the Cardiogenics Consortium (The New England journal of medicine 2007) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC646736 Gene

Products for LOC646736 Gene

Sources for LOC646736 Gene