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Aliases for LOC646736 Gene
Subcategory (RNA class) for LOC646736 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC646736 Gene
External Ids for LOC646736 Gene
- Entrez Gene: 646736
Previous GeneCards Identifiers for LOC646736 Gene
- GC02P226715
- GC02U901574
Summaries for LOC646736 Gene
GeneCards Summary for LOC646736 Gene
LOC646736 (Uncharacterized LOC646736) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC646736 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646736 Gene
Genomics for LOC646736 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC646736 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J226142 | Enhancer | 0.3 | Ensembl | 600.7 | +0.0 | 7 | 0.8 | ZSCAN9 | LOC646736 ENSG00000235070 IRS1 NYAP2 | |
| GH02J226153 | Enhancer | 1.4 | Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.4 | +14.7 | 14661 | 8.7 | GATAD2A TEAD4 TFE3 SOX13 RCOR2 RBFOX2 POLR2A RXRB SP1 GABPA | ENSG00000235070 IRS1 LOC646736 NYAP2 | |
| GH02J226113 | Enhancer | 1.5 | FANTOM5 Ensembl ENCODE dbSUPER | 0.4 | -21.5 | -21527 | 15.5 | CEBPG CREB1 GATAD2A ATF7 SOX13 RCOR2 ZNF7 TARDBP ZHX2 FOXA1 | lnc-NYAP2-11 LOC646736 ENSG00000235070 IRS1 NYAP2 | |
| GH02J226138 | Enhancer | 0.8 | dbSUPER | 0.7 | -3.1 | -3143 | 2.2 | GATAD2A ZNF7 RXRB IRF2 CEBPA SOX13 ZKSCAN8 KAT7 ZBTB25 TEAD1 | ENSG00000235070 LOC646736 lnc-NYAP2-11 NYAP2 IRS1 | |
| GH02J226135 | Enhancer | 1.1 | FANTOM5 ENCODE dbSUPER | 0.4 | -5.8 | -5784 | 2.7 | CREB1 ATF7 JUND CEBPB U2AF2 FOXA2 MAFF MAFK TEAD1 FOSL2 | ENSG00000235070 LOC646736 lnc-NYAP2-11 NYAP2 IRS1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC646736 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC646736 Gene
Genomic Locations for LOC646736 Gene
- chr2:226,142,794-226,181,765
- (GRCh38/hg38)
- Size:
- 38,972 bases
- Orientation:
- Plus strand
Genomic View for LOC646736 Gene
Genes around LOC646736 on UCSC Golden Path with GeneCards custom track
LOC646736 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q36.3 by Entrez Gene
LOC646736 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC646736 Gene
Proteins for LOC646736 Gene
Post-translational modifications for LOC646736 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC646736
- Origene Custom Protein Services for LOC646736
No data available for DME Specific Peptides for LOC646736 Gene
Domains & Families for LOC646736 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646736 Gene
Function for LOC646736 Gene
Phenotypes From GWAS Catalog for LOC646736 Gene
Phenotypes for LOC646736 Gene
- GenomeRNAi human phenotypes for LOC646736:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LOC646736
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646736 Gene
Localization for LOC646736 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646736 Gene
Transcripts for LOC646736 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC646736 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075DB7D_9606 | lncRNA | 935 | 3 |
RefSeq: NR_046102, LNCipedia: lnc-NYAP2-5:1, NONCODE: NONHSAT077183.2, |
| URS0000D5E250_9606 | lncRNA | 2251 | 2 |
LncBook: HSALNT0048103, LNCipedia: lnc-NYAP2-5:4, |
| URS0000D5AADF_9606 | lncRNA | 2103 | 2 |
LncBook: HSALNT0048105, LNCipedia: lnc-NYAP2-5:6, |
| URS0000D5785A_9606 | lncRNA | 287 | 2 |
LncBook: HSALNT0048102, LNCipedia: lnc-NYAP2-5:2, |
| URS0000D5798B_9606 | lncRNA | 1070 | 1 |
LNCipedia: lnc-NYAP2-5:3, |
LOC646736 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC646736 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LOC646736
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC646736 Gene
- GeneLoc Exon Structure for
- LOC646736
Expression for LOC646736 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC646736
SOURCE GeneReport for Unigene cluster for LOC646736 Gene:
Hs.712836
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646736 Gene
Orthologs for LOC646736 Gene
No data available for Orthologs and Evolution for LOC646736 Gene
Paralogs for LOC646736 Gene
No data available for Paralogs for LOC646736 Gene
Variants for LOC646736 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv2161n106 | CNV | deletion | 24896259 |
| esv2278504 | CNV | deletion | 18987734 |
| esv2721541 | CNV | deletion | 23290073 |
| esv3561084 | CNV | deletion | 23714750 |
| esv3584365 | CNV | loss | 25503493 |
| nsv1072075 | CNV | deletion | 25765185 |
| nsv1149501 | CNV | deletion | 26484159 |
| nsv214476 | CNV | deletion | 16902084 |
| nsv525291 | CNV | gain | 19592680 |
| nsv584559 | CNV | loss | 21841781 |
| nsv954187 | CNV | deletion | 24416366 |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC646736 Gene
Disorders for LOC646736 Gene
No disorders were found for LOC646736 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646736 Gene
Publications for LOC646736 Gene
- Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight BF … GIANT Consortium (Nature genetics 2010) 3
- Genomewide association analysis of coronary artery disease. (PMID: 17634449) Samani NJ … WTCCC and the Cardiogenics Consortium (The New England journal of medicine 2007) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LOC646736 Gene
Products for LOC646736 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC646736
- Origene Custom Protein Services for LOC646736
- Browse OriGene Inhibitory RNA Products For LOC646736
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC646736
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC646736
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC646736
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC646736
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC646736
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC646736
Sources for LOC646736 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB