Free for academic non-profit institutions. Other users need a Commercial license
LOC646736 (Uncharacterized LOC646736) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH02J226142 | Enhancer | 0.3 | Ensembl | 600.7 | +0.0 | 7 | 0.8 | ZSCAN9 | LOC646736 ENSG00000235070 IRS1 NYAP2 | |
GH02J226153 | Enhancer | 1.4 | Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.4 | +14.7 | 14661 | 8.7 | GATAD2A TEAD4 TFE3 SOX13 RCOR2 RBFOX2 POLR2A RXRB SP1 GABPA | ENSG00000235070 IRS1 LOC646736 NYAP2 | |
GH02J226113 | Enhancer | 1.5 | FANTOM5 Ensembl ENCODE dbSUPER | 0.4 | -21.5 | -21527 | 15.5 | CEBPG CREB1 GATAD2A ATF7 SOX13 RCOR2 ZNF7 TARDBP ZHX2 FOXA1 | lnc-NYAP2-11 LOC646736 ENSG00000235070 IRS1 NYAP2 | |
GH02J226138 | Enhancer | 0.8 | dbSUPER | 0.7 | -3.1 | -3143 | 2.2 | GATAD2A ZNF7 RXRB IRF2 CEBPA SOX13 ZKSCAN8 KAT7 ZBTB25 TEAD1 | ENSG00000235070 LOC646736 lnc-NYAP2-11 NYAP2 IRS1 | |
GH02J226135 | Enhancer | 1.1 | FANTOM5 ENCODE dbSUPER | 0.4 | -5.8 | -5784 | 2.7 | CREB1 ATF7 JUND CEBPB U2AF2 FOXA2 MAFF MAFK TEAD1 FOSL2 | ENSG00000235070 LOC646736 lnc-NYAP2-11 NYAP2 IRS1 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000075DB7D_9606 | lncRNA | 935 | 3 |
RefSeq: NR_046102, LNCipedia: lnc-NYAP2-5:1, NONCODE: NONHSAT077183.2, |
URS0000D5E250_9606 | lncRNA | 2251 | 2 |
LncBook: HSALNT0048103, LNCipedia: lnc-NYAP2-5:4, |
URS0000D5AADF_9606 | lncRNA | 2103 | 2 |
LncBook: HSALNT0048105, LNCipedia: lnc-NYAP2-5:6, |
URS0000D5785A_9606 | lncRNA | 287 | 2 |
LncBook: HSALNT0048102, LNCipedia: lnc-NYAP2-5:2, |
URS0000D5798B_9606 | lncRNA | 1070 | 1 |
LNCipedia: lnc-NYAP2-5:3, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv2161n106 | CNV | deletion | 24896259 |
esv2278504 | CNV | deletion | 18987734 |
esv2721541 | CNV | deletion | 23290073 |
esv3561084 | CNV | deletion | 23714750 |
esv3584365 | CNV | loss | 25503493 |
nsv1072075 | CNV | deletion | 25765185 |
nsv1149501 | CNV | deletion | 26484159 |
nsv214476 | CNV | deletion | 16902084 |
nsv525291 | CNV | gain | 19592680 |
nsv584559 | CNV | loss | 21841781 |
nsv954187 | CNV | deletion | 24416366 |
No disorders were found for LOC646736 Gene.