Aliases for LOC646652 Gene

Aliases for LOC646652 Gene

  • Integral Membrane Glycoprotein-Like Pseudogene 3

External Ids for LOC646652 Gene

Previous GeneCards Identifiers for LOC646652 Gene

  • GC05U900577
  • GC05M021484
  • GC05P034208
  • GC05P034211
  • GC05P034214
  • GC05P034249
  • GC05P034252
  • GC05P034246
  • GC05P034217
  • GC05P034222
  • GC05P034229
  • GC05P034232
  • GC05P034237
  • GC05P034240

Summaries for LOC646652 Gene

GeneCards Summary for LOC646652 Gene

LOC646652 (Integral Membrane Glycoprotein-Like Pseudogene) is a Pseudogene.

Additional gene information for LOC646652 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646652 Gene

Genomics for LOC646652 Gene

GeneHancer (GH) Regulatory Elements for LOC646652 Gene

Promoters and enhancers for LOC646652 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J034189 Enhancer 0.3 Ensembl CraniofacialAtlas 500.7 +1.3 1276 1.9 ENSG00000215156 LOC646652 lnc-C1QTNF3-AMACR-3 piR-33939-002 piR-34006-001 piR-31573-018 piR-31573-019 piR-31606-004 piR-34748-003 piR-34748-004
GH05J034187 Enhancer 0.2 Ensembl 500.7 -1.1 -1120 1.6 ENSG00000215156 LOC646652 lnc-C1QTNF3-AMACR-3 piR-33570-008 piR-42794-009 piR-42807-002 lnc-C1QTNF3-AMACR-2 ENSG00000215158
GH05J034192 Enhancer 0.5 Ensembl ENCODE CraniofacialAtlas 0.7 +3.3 3280 2 piR-33939-002 piR-33939-003 piR-34006-001 piR-34006-002 piR-31573-018 piR-31573-019 piR-31573-020 piR-31606-004 piR-34748-003 piR-34748-004
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646652 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC646652 Gene

Genomic Locations for LOC646652 Gene
chr5:34,189,521-34,193,736
(GRCh38/hg38)
Size:
4,216 bases
Orientation:
Plus strand
chr5:34,190,161-34,193,758
(GRCh37/hg19)
Size:
3,598 bases
Orientation:
Plus strand

Genomic View for LOC646652 Gene

Genes around LOC646652 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646652 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646652 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646652 Gene

Proteins for LOC646652 Gene

Post-translational modifications for LOC646652 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646652 Gene

Domains & Families for LOC646652 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646652 Gene

Function for LOC646652 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646652 Gene

Localization for LOC646652 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646652 Gene

Pathways & Interactions for LOC646652 Gene

PathCards logo

SuperPathways for LOC646652 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC646652 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC646652 Gene

Drugs & Compounds for LOC646652 Gene

No Compound Related Data Available

Transcripts for LOC646652 Gene

mRNA/cDNA for LOC646652 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646652 Gene

No ASD Table

Relevant External Links for LOC646652 Gene

GeneLoc Exon Structure for
LOC646652

Expression for LOC646652 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC646652 Gene

mRNA differential expression in normal tissues according to GTEx for LOC646652 Gene

This gene is overexpressed in Testis (x42.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC646652

SOURCE GeneReport for Unigene cluster for LOC646652 Gene:

Hs.546584
genes like me logo Genes that share expression patterns with LOC646652: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646652 Gene

Orthologs for LOC646652 Gene

No data available for Orthologs and Evolution for LOC646652 Gene

Paralogs for LOC646652 Gene

No data available for Paralogs for LOC646652 Gene

Variants for LOC646652 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646652 Gene

Disorders for LOC646652 Gene

No disorders were found for LOC646652 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646652 Gene

Publications for LOC646652 Gene

  1. A provisional transcript map of the spinal muscular atrophy (SMA) critical region. (PMID: 7552146) van der Steege G … van Ommen GJ (European journal of human genetics : EJHG 1995) 3 54

No data available for Mastermind for LOC646652 Gene

Products for LOC646652 Gene

Sources for LOC646652 Gene