LOC646626 Gene (RNA Gene)

Uncharacterized LOC646626

GC01P085276
GIFtS:
11

Aliases for LOC646626 Gene

Subcategory (RNA class) for LOC646626 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC646626 Gene

  • Uncharacterized LOC646626 3
  • HSALNG0004863 169
  • NONHSAG001968 94
  • Lnc-CYR61-3 170

External Ids for LOC646626 Gene

Previous GeneCards Identifiers for LOC646626 Gene

  • GC01P085514
  • GC01P085743

Summaries for LOC646626 Gene

GeneCards Summary for LOC646626 Gene

LOC646626 (Uncharacterized LOC646626) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC646626 include Immunodeficiency 37.

Additional gene information for LOC646626 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646626 Gene

Genomics for LOC646626 Gene

GeneHancer (GH) Regulatory Elements for LOC646626 Gene

Promoters and enhancers for LOC646626 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J085273 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.7 686 6.9 ZBTB40 SP1 ZBTB6 FOXA1 RBPJ SMARCE1 POLR2A CTBP1 ATF1 CREB1 BCL10 ENSG00000223653 LOC646626 CCN1 ENSG00000232622 C1orf52 RPF1 DDAH1 RF00017-256
GH01J085274 Promoter/Enhancer 0.6 Ensembl dbSUPER 0.6 -3.1 -3057 0.2 MAFG BCL10 LOC646626 ENSG00000223254
GH01J085268 Enhancer 0.8 ENCODE dbSUPER 0.4 -6.2 -6237 2.8 ZNF121 SP1 MAFK PRDM1 HNF1A ZNF644 RXRA ZNF316 MAFG MAX BCL10 ENSG00000223254 LOC646626
GH01J085263 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 -12.0 -11957 1.2 PKNOX1 ENSG00000223254 C1orf52 DDAH1 BCL10 LOC646626
GH01J085272 Enhancer 0.4 FANTOM5 dbSUPER 0.6 -4.1 -4124 0.4 DDAH1 BCL10 LOC646626 ENSG00000223254
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646626 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC646626 gene promoter:
  • ATF-2
  • c-Jun
  • FAC1
  • HEN1
  • HNF-3beta
  • Nkx6-1
  • POU3F2
  • POU3F2 (N-Oct-5a)
  • POU3F2 (N-Oct-5b)

Genomic Locations for LOC646626 Gene

Genomic Locations for LOC646626 Gene
chr1:85,276,358-85,278,088
(GRCh38/hg38)
Size:
1,731 bases
Orientation:
Plus strand
chr1:85,742,123-85,913,807
(GRCh37/hg19)
Size:
171,685 bases
Orientation:
Plus strand

Genomic View for LOC646626 Gene

Genes around LOC646626 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646626 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC646626 Gene

Proteins for LOC646626 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC646626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646626 Gene

Domains & Families for LOC646626 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646626 Gene

Function for LOC646626 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646626 Gene

Localization for LOC646626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646626 Gene

Pathways & Interactions for LOC646626 Gene

PathCards logo

SuperPathways for LOC646626 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC646626 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646626 Gene

Drugs & Compounds for LOC646626 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC646626 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC646626 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(5) RNACentral transcripts :
(2) LncBook transcripts :
(4) LNCipedia transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646626 Gene

No ASD Table

Relevant External Links for LOC646626 Gene

GeneLoc Exon Structure for
LOC646626

Expression for LOC646626 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC646626 Gene

mRNA expression in normal human tissues for LOC646626 Gene
mRNA expression by GTEx for LOC646626 Gene

mRNA differential expression in normal tissues according to GTEx for LOC646626 Gene

This gene is overexpressed in Testis (x9.2).

SOURCE GeneReport for Unigene cluster for LOC646626 Gene:

Hs.653214
genes like me logo Genes that share expression patterns with LOC646626: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646626 Gene

Orthologs for LOC646626 Gene

No data available for Orthologs and Evolution for LOC646626 Gene

Paralogs for LOC646626 Gene

No data available for Paralogs for LOC646626 Gene

Variants for LOC646626 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC646626 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs12037217 benign, Immunodeficiency 37 85,276,340(+) C/A upstream_transcript_variant
rs200626032 likely-benign, Immunodeficiency 37 85,276,347(+) C/G/T upstream_transcript_variant
rs606231305 pathogenic, Immunodeficiency 37 85,276,295(+) C/T upstream_transcript_variant
rs11576939 benign, not specified 85,276,329(+) G/A/C upstream_transcript_variant
rs1000383283 -- 85,275,929(+) G/A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC646626 Gene

Variant ID Type Subtype PubMed ID
esv34165 CNV loss 18971310
nsv830459 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC646626 Gene

Disorders for LOC646626 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC646626 Gene - From: GeneCards

Disorder Aliases PubMed IDs
immunodeficiency 37
  • imd37
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC646626: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646626 Gene

Publications for LOC646626 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC646626 Gene

Products for LOC646626 Gene

Sources for LOC646626 Gene