LOC646626 Gene (RNA Gene)

Uncharacterized LOC646626

GC01P085276
GIFtS:
10
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Aliases for LOC646626 Gene

Subcategory (RNA class) for LOC646626 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC646626 Gene

  • Uncharacterized LOC646626 3
  • NONHSAG001968.2 91
  • HSALNG0004863 164
  • Lnc-CYR61-3 165

External Ids for LOC646626 Gene

Previous GeneCards Identifiers for LOC646626 Gene

  • GC01P085514
  • GC01P085743

Summaries for LOC646626 Gene

GeneCards Summary for LOC646626 Gene

LOC646626 (Uncharacterized LOC646626) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC646626 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646626 Gene

Genomics for LOC646626 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC646626 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J085273 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.7 686 6.9 ZNF221 SP1 CREB1 PRDM10 REST ZNF629 LEF1 IKZF1 ZNF692 POLR2A BCL10 ENSG00000223653 LOC646626 DDAH1 RF00017-256
GH01J085274 Promoter/Enhancer 0.7 Ensembl dbSUPER 0.7 -3.1 -3057 0.2 MAFG POLR2A BCL10 LOC646626 ENSG00000223254 C1orf52
GH01J085268 Enhancer 0.8 ENCODE dbSUPER 0.4 -6.2 -6237 2.8 REST PRDM1 SP1 ZNF316 MAFF MAFK MAFG RXRA MAX YY1 BCL10 ENSG00000223254 LOC646626 C1orf52
GH01J085263 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 -12.0 -11957 1.2 PKNOX1 ENSG00000223254 C1orf52 DDAH1 BCL10 LOC646626
GH01J085272 Enhancer 0.4 FANTOM5 dbSUPER 0.7 -4.1 -4124 0.4 DDAH1 BCL10 LOC646626 ENSG00000223254 C1orf52
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646626 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC646626 gene promoter:
  • ATF-2
  • c-Jun
  • FAC1
  • HEN1
  • HNF-3beta
  • Nkx6-1
  • POU3F2
  • POU3F2 (N-Oct-5a)
  • POU3F2 (N-Oct-5b)

Genomic Locations for LOC646626 Gene

Genomic Locations for LOC646626 Gene
chr1:85,276,358-85,278,088
(GRCh38/hg38)
Size:
1,731 bases
Orientation:
Plus strand
chr1:85,742,123-85,913,807
(GRCh37/hg19)
Size:
171,685 bases
Orientation:
Plus strand

Genomic View for LOC646626 Gene

Genes around LOC646626 on UCSC Golden Path with GeneCards custom track
LOC646626 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC646626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646626 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC646626 Gene

Proteins for LOC646626 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC646626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646626 Gene

Domains & Families for LOC646626 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646626 Gene

Function for LOC646626 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC646626 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646626 Gene

Localization for LOC646626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646626 Gene

Pathways & Interactions for LOC646626 Gene

PathCards logo

SuperPathways for LOC646626 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC646626 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC646626 Gene

Drugs & Compounds for LOC646626 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC646626 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC646626 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D5E4_9606 lncRNA 888 3

RefSeq: NR_045484,

LNCipedia: lnc-CYR61-3:3,

NONCODE: NONHSAT004241.2,

URS0000D5998F_9606 lncRNA 4049 2

LncBook: HSALNT0009822,

LNCipedia: lnc-CYR61-3:13,

URS0000D57281_9606 lncRNA 870 2

LncBook: HSALNT0009819,

LNCipedia: lnc-CYR61-3:11,

URS00009C4630_9606 lncRNA 2319 1

NONCODE: NONHSAT149280.1,

URS0000D5B767_9606 lncRNA 1899 1

LNCipedia: lnc-CYR61-3:12,

LOC646626 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC646626 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646626 Gene

No ASD Table

Relevant External Links for LOC646626 Gene

GeneLoc Exon Structure for
LOC646626

Expression for LOC646626 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC646626 Gene

mRNA expression in normal human tissues for LOC646626 Gene
mRNA expression by GTEx for LOC646626 Gene

mRNA differential expression in normal tissues according to GTEx for LOC646626 Gene

This gene is overexpressed in Testis (x9.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC646626

SOURCE GeneReport for Unigene cluster for LOC646626 Gene:

Hs.653214
genes like me logo Genes that share expression patterns with LOC646626: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646626 Gene

Orthologs for LOC646626 Gene

No data available for Orthologs and Evolution for LOC646626 Gene

Paralogs for LOC646626 Gene

No data available for Paralogs for LOC646626 Gene

Variants for LOC646626 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC646626 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC646626 Gene

Variant ID Type Subtype PubMed ID
esv34165 CNV loss 18971310
nsv830459 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC646626 Gene

Disorders for LOC646626 Gene

No disorders were found for LOC646626 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646626 Gene

Publications for LOC646626 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC646626 Gene

Products for LOC646626 Gene

Sources for LOC646626 Gene