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Aliases for LOC646616 Gene

Aliases for LOC646616 Gene

  • Transmembrane Protein 183A Pseudogene 3
  • AC074134.1 5

External Ids for LOC646616 Gene

Previous GeneCards Identifiers for LOC646616 Gene

  • GC05P032558

Summaries for LOC646616 Gene

GeneCards Summary for LOC646616 Gene

LOC646616 (Transmembrane Protein 183A Pseudogene) is a Pseudogene.

Additional gene information for LOC646616 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC646616 Gene

Genomics for LOC646616 Gene

GeneHancer (GH) Regulatory Elements for LOC646616 Gene

Promoters and enhancers for LOC646616 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J032522 Enhancer 0.7 Ensembl ENCODE 650.7 +0.1 111 0.8 CREB1 CEBPG ATF7 ATF2 GABPA LOC646616 GC05P032525 SUB1
GH05J032582 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.6 +62.2 62233 5.3 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 IRF4 SUB1 LOC646616 ZFR GC05M032623
GH05J032489 Enhancer 1.1 Ensembl ENCODE 12.6 -32.5 -32518 1.7 FOXA2 ARID4B FEZF1 ZNF2 ZNF48 ZNF121 ZNF213 ZNF143 RUNX3 DEK LOC646616 SUB1 ZFR MIR579
GH05J032572 Enhancer 1.1 ENCODE dbSUPER 12.5 +51.1 51149 2.7 HDGF FOXA2 ARID4B DMAP1 IRF4 ETS1 ZNF143 ATF7 RUNX3 RXRA SUB1 LOC646616 ENSG00000249572 MTMR12 GC05M032623
GH05J032329 Enhancer 1.3 Ensembl ENCODE dbSUPER 10 -191.8 -191837 3.2 FOXA2 ARID4B DMAP1 ARID2 ZNF143 RUNX3 DEK RXRA REST PPARG MTMR12 MIR579 ZFR GOLPH3 LOC646616 SUB1 GC05P032360
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646616 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC646616 Gene

Genomic Locations for LOC646616 Gene
chr5:32,522,740-32,524,086
(GRCh38/hg38)
Size:
1,347 bases
Orientation:
Plus strand
chr5:32,522,852-32,524,192
(GRCh37/hg19)
Size:
1,341 bases
Orientation:
Plus strand

Genomic View for LOC646616 Gene

Genes around LOC646616 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646616 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646616 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646616 Gene

Proteins for LOC646616 Gene

Post-translational modifications for LOC646616 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646616 Gene

Domains & Families for LOC646616 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC646616 Gene

Function for LOC646616 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646616 Gene

Localization for LOC646616 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646616 Gene

Pathways & Interactions for LOC646616 Gene

SuperPathways for LOC646616 Gene

No Data Available

Interacting Proteins for LOC646616 Gene

Gene Ontology (GO) - Biological Process for LOC646616 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646616 Gene

Drugs & Compounds for LOC646616 Gene

No Compound Related Data Available

Transcripts for LOC646616 Gene

mRNA/cDNA for LOC646616 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646616 Gene

No ASD Table

Relevant External Links for LOC646616 Gene

GeneLoc Exon Structure for
LOC646616

Expression for LOC646616 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC646616 Gene

genes like me logo Genes that share expression patterns with LOC646616: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646616 Gene

Orthologs for LOC646616 Gene

Evolution for LOC646616 Gene

ENSEMBL:
Gene Tree for LOC646616 (if available)
TreeFam:
Gene Tree for LOC646616 (if available)

No data available for Orthologs for LOC646616 Gene

Paralogs for LOC646616 Gene

No data available for Paralogs for LOC646616 Gene

Variants for LOC646616 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646616 Gene

Disorders for LOC646616 Gene

No disorders were found for LOC646616 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646616 Gene

Publications for LOC646616 Gene

No publications were found for LOC646616 Gene.

Products for LOC646616 Gene

Sources for LOC646616 Gene

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