LOC646517 Gene (Pseudogene)

WT1 Associated Protein Pseudogene

GC06M051410
GIFtS:
4
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Aliases for LOC646517 Gene

Aliases for LOC646517 Gene

  • WT1 Associated Protein Pseudogene 3
  • Wilms Tumor 1 Associated Protein Pseudogene 3

External Ids for LOC646517 Gene

Previous GeneCards Identifiers for LOC646517 Gene

  • GC06M051381
  • GC06M051275

Summaries for LOC646517 Gene

GeneCards Summary for LOC646517 Gene

LOC646517 (WT1 Associated Protein Pseudogene) is a Pseudogene. Diseases associated with LOC646517 include Wilms Tumor 1.

Additional gene information for LOC646517 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646517 Gene

Genomics for LOC646517 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC646517 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J051409 Enhancer 0.3 UCNEbase 600.7 +0.6 618 0.3 ENSG00000232702 LOC105375085 LOC646517 lnc-PKHD1-2 PKHD1 TFAP2B
GH06J051410 Enhancer 0.2 FANTOM5 600.7 +0.0 44 0.5 ENSG00000232702 LOC646517 lnc-PKHD1-2 ENSG00000212532 PKHD1 TFAP2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646517 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC646517 gene promoter:
  • Cdc5
  • GR
  • GR-alpha
  • GR-beta
  • MAZR
  • MEF-2A
  • Nkx2-2
  • Pbx1a
  • STAT5B
  • TBP

Genomic Locations for LOC646517 Gene

Genomic Locations for LOC646517 Gene
chr6:51,409,884-51,410,737
(GRCh38/hg38)
Size:
854 bases
Orientation:
Minus strand
chr6:51,274,879-51,275,335
(GRCh37/hg19)
Size:
457 bases
Orientation:
Minus strand

Genomic View for LOC646517 Gene

Genes around LOC646517 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646517 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646517 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC646517 Gene

Proteins for LOC646517 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC646517 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646517 Gene

Domains & Families for LOC646517 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646517 Gene

Function for LOC646517 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC646517 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646517 Gene

Localization for LOC646517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646517 Gene

Pathways & Interactions for LOC646517 Gene

PathCards logo

SuperPathways for LOC646517 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC646517 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC646517 Gene

Drugs & Compounds for LOC646517 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC646517 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646517 Gene

No ASD Table

Relevant External Links for LOC646517 Gene

GeneLoc Exon Structure for
LOC646517

No data available for mRNA/cDNA for LOC646517 Gene

Expression for LOC646517 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC646517 Gene

mRNA expression in normal human tissues for LOC646517 Gene
mRNA expression by GTEx for LOC646517 Gene
genes like me logo Genes that share expression patterns with LOC646517: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646517 Gene

Orthologs for LOC646517 Gene

No data available for Orthologs and Evolution for LOC646517 Gene

Paralogs for LOC646517 Gene

No data available for Paralogs for LOC646517 Gene

Variants for LOC646517 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646517 Gene

Disorders for LOC646517 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC646517 Gene - From: GeneCards

Disorder Aliases PubMed IDs
wilms tumor 1
  • wt1
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC646517: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646517 Gene

Publications for LOC646517 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3

No data available for Mastermind for LOC646517 Gene

Products for LOC646517 Gene

Sources for LOC646517 Gene