Aliases for LOC646471 Gene

Subcategory (RNA class) for LOC646471 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC646471 Gene

  • Uncharacterized LOC646471 3
  • NONHSAG000742.2 91
  • Lnc-AUNIP-2 165

External Ids for LOC646471 Gene

Previous GeneCards Identifiers for LOC646471 Gene

  • GC01M026019
  • GC01M026147
  • GC01M026149

Summaries for LOC646471 Gene

GeneCards Summary for LOC646471 Gene

LOC646471 (Uncharacterized LOC646471) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC646471 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646471 Gene

Genomics for LOC646471 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC646471 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J025826 Enhancer 0.6 Ensembl dbSUPER 600.7 -1.7 -1695 0.6 ZNF316 ZNF664 HMG20A LOC646471 MTFR1L piR-56038-001 AUNIP
GH01J025824 Enhancer 0.4 Ensembl dbSUPER 600.7 -0.9 -895 0.6 ZNF664 LOC646471 piR-56038-001 MTFR1L AUNIP
GH01J025817 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.6 3575 4.7 BRCA1 ARHGAP35 SP1 HNRNPL GATAD2A CTCF PRDM10 IKZF1 POLR2A ZNF692 MTFR1L ENSG00000228172 SELENON ARID1A HMGN2 DHDDS-AS1 ENSG00000261349 SYF2 PIGV SH3BGRL3
GH01J025825 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -2.3 -2349 0.5 POLR2A NFE2 ZNF316 MAFF MAFK FOXP1 SAP130 NFE2L2 HMG20A RAD21 SELENON LOC646471 piR-56038-001 MTFR1L AUNIP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646471 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC646471 gene promoter:
  • AML1a
  • FAC1
  • FOXO1
  • FOXO1a
  • HEN1
  • NF-AT
  • NF-AT1
  • NF-AT2
  • NF-AT3
  • NF-AT4

Genomic Locations for LOC646471 Gene

Genomic Locations for LOC646471 Gene
chr1:25,819,954-25,823,606
(GRCh38/hg38)
Size:
3,653 bases
Orientation:
Minus strand
chr1:26,146,445-26,150,097
(GRCh37/hg19)
Size:
3,653 bases
Orientation:
Minus strand

Genomic View for LOC646471 Gene

Genes around LOC646471 on UCSC Golden Path with GeneCards custom track
LOC646471 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC646471 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646471 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646471 Gene

Proteins for LOC646471 Gene

Post-translational modifications for LOC646471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646471 Gene

Domains & Families for LOC646471 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646471 Gene

Function for LOC646471 Gene

Phenotypes From GWAS Catalog for LOC646471 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646471 Gene

Localization for LOC646471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646471 Gene

Pathways & Interactions for LOC646471 Gene

PathCards logo

SuperPathways for LOC646471 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC646471 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC646471 Gene

Drugs & Compounds for LOC646471 Gene

No Compound Related Data Available

Transcripts for LOC646471 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC646471 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A9AE_9606 lncRNA 3653 3

RefSeq: NR_024498,

LNCipedia: lnc-AUNIP-2:1,

NONCODE: NONHSAT001750.2,

LOC646471 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC646471 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646471 Gene

No ASD Table

Relevant External Links for LOC646471 Gene

GeneLoc Exon Structure for
LOC646471

Expression for LOC646471 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC646471 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC646471

SOURCE GeneReport for Unigene cluster for LOC646471 Gene:

Hs.727271
genes like me logo Genes that share expression patterns with LOC646471: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646471 Gene

Orthologs for LOC646471 Gene

No data available for Orthologs and Evolution for LOC646471 Gene

Paralogs for LOC646471 Gene

No data available for Paralogs for LOC646471 Gene

Variants for LOC646471 Gene

Additional dbSNP identifiers (rs#s) for LOC646471 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC646471 Gene

Variant ID Type Subtype PubMed ID
esv1998326 CNV deletion 18987734
esv2671091 CNV deletion 23128226
nsv460884 CNV loss 19166990
nsv545883 CNV loss 21841781
nsv7490 CNV deletion 18451855
nsv834491 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC646471 Gene

Disorders for LOC646471 Gene

No disorders were found for LOC646471 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646471 Gene

Publications for LOC646471 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC646471 Gene

Products for LOC646471 Gene

Sources for LOC646471 Gene