Aliases for LOC646408 Gene

Aliases for LOC646408 Gene

  • Chromosome 9 Open Reading Frame 16 Pseudogene 3

External Ids for LOC646408 Gene

Previous GeneCards Identifiers for LOC646408 Gene

  • GC22M027561
  • GC22M029232

Summaries for LOC646408 Gene

GeneCards Summary for LOC646408 Gene

LOC646408 (Chromosome 9 Open Reading Frame 16 Pseudogene) is a Pseudogene.

Additional gene information for LOC646408 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC646408 Gene

Genomics for LOC646408 Gene

GeneHancer (GH) Regulatory Elements for LOC646408 Gene

Promoters and enhancers for LOC646408 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J028865 Enhancer 1.1 FANTOM5 Ensembl 0.3 -29.0 -28986 1.2 POLR2G NCOR1 KDM6A TCF7 ZBTB25 TGIF2 SKI TEAD1 ZBTB26 ZKSCAN8 ZNRF3 CCDC117 C22orf31 CHEK2 HSALNG0134793 LOC646408
GH22J028855 Enhancer 0.9 Ensembl ENCODE 0.4 -19.7 -19686 0.6 CTCF TEAD4 REST RAD21 TRIM22 TEAD1 SMC3 CEBPB SAP130 GATA3 CCDC117 LOC646408 HSALNG0134793 ZNRF3
GH22J028840 Enhancer 0.4 Ensembl 0.4 -5.4 -5387 1.6 FOXA2 CTCF FOXA1 CEBPA ZNRF3 CCDC117 C22orf31 HSCB ASCC2 LOC646408 HSALNG0134793 ENSG00000226471
GH22J028868 Enhancer 0.4 Ensembl 0.3 -32.4 -32386 1.2 POLR2A SP1 BHLHE40 PKNOX1 PAX5 ZNRF3 CHEK2 XBP1 HSALNG0134793 LOC646408
GH22J028844 Enhancer 0.3 Ensembl 0.4 -8.3 -8287 0.6 ZNF513 ZNRF3 CCDC117 C22orf31 ASCC2 LOC646408 HSALNG0134793 ENSG00000226471
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC646408 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC646408 Gene

Genomic Locations for LOC646408 Gene
chr22:28,835,614-28,836,214
(GRCh38/hg38)
Size:
601 bases
Orientation:
Minus strand
chr22:29,231,602-29,232,202
(GRCh37/hg19)
Size:
601 bases
Orientation:
Minus strand

Genomic View for LOC646408 Gene

Genes around LOC646408 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646408 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646408 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646408 Gene

Proteins for LOC646408 Gene

Post-translational modifications for LOC646408 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646408 Gene

Domains & Families for LOC646408 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC646408 Gene

Function for LOC646408 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646408 Gene

Localization for LOC646408 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646408 Gene

Pathways & Interactions for LOC646408 Gene

PathCards logo

SuperPathways for LOC646408 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC646408 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC646408 Gene

Drugs & Compounds for LOC646408 Gene

No Compound Related Data Available

Transcripts for LOC646408 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646408 Gene

No ASD Table

Relevant External Links for LOC646408 Gene

GeneLoc Exon Structure for
LOC646408

No data available for mRNA/cDNA for LOC646408 Gene

Expression for LOC646408 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC646408 Gene

genes like me logo Genes that share expression patterns with LOC646408: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646408 Gene

Orthologs for LOC646408 Gene

No data available for Orthologs and Evolution for LOC646408 Gene

Paralogs for LOC646408 Gene

No data available for Paralogs for LOC646408 Gene

Variants for LOC646408 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646408 Gene

Disorders for LOC646408 Gene

No disorders were found for LOC646408 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646408 Gene

Publications for LOC646408 Gene

No publications were found for LOC646408 Gene.

No data available for Mastermind for LOC646408 Gene

Products for LOC646408 Gene

Sources for LOC646408 Gene