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Aliases for LOC646203 Gene

Subcategory (RNA class) for LOC646203 Gene

lncRNA

Aliases for LOC646203 Gene

  • MRT4 Homolog, Ribosome Maturation Factor Pseudogene 3
  • MRNA Turnover 4 Homolog (S. Cerevisiae) Pseudogene 3
  • AP001357.2 5

External Ids for LOC646203 Gene

ORGUL Members for LOC646203 Gene

Previous GeneCards Identifiers for LOC646203 Gene

  • GC18M013132
  • GC18M013140
  • GC18M013143
  • GC18M013249
  • GC18M013145
  • GC18M013454
  • GC18M013546
  • GC18M013840
  • GC18M014101
  • GC18M014397
  • GC18M014689
  • GC18M014950

Summaries for LOC646203 Gene

GeneCards Summary for LOC646203 Gene

LOC646203 (MRT4 Homolog, Ribosome Maturation Factor Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC646203 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC646203 Gene

Genomics for LOC646203 Gene

GeneHancer (GH) Regulatory Elements for LOC646203 Gene

Promoters and enhancers for LOC646203 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J013135 Enhancer 1.1 Ensembl ENCODE 0.7 +3.0 3005 3.5 PKNOX1 FOXA2 ARID4B DMAP1 ZNF48 YY1 RUNX3 RXRA NFYC REST CEP192 PTPN2 PSMG2 LOC646203 GC18P013134
GH18J013147 Enhancer 0.7 Ensembl 0.4 -6.8 -6812 0.2 SOX13 FOXA2 SAP130 CEBPG YBX1 ZNF644 POLR2A HOMEZ IKZF2 MIXL1 LOC100130487 LOC646203
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC646203 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC646203 Gene

Genomic Locations for LOC646203 Gene
chr18:13,139,777-13,140,489
(GRCh38/hg38)
Size:
713 bases
Orientation:
Minus strand
chr18:13,139,776-13,140,488
(GRCh37/hg19)
Size:
713 bases
Orientation:
Minus strand

Genomic View for LOC646203 Gene

Genes around LOC646203 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646203 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646203 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646203 Gene

Proteins for LOC646203 Gene

Post-translational modifications for LOC646203 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646203 Gene

Domains & Families for LOC646203 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC646203 Gene

Function for LOC646203 Gene

Phenotypes for LOC646203 Gene

GenomeRNAi human phenotypes for LOC646203:
genes like me logo Genes that share phenotypes with LOC646203: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646203 Gene

Localization for LOC646203 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646203 Gene

Pathways & Interactions for LOC646203 Gene

SuperPathways for LOC646203 Gene

No Data Available

Interacting Proteins for LOC646203 Gene

Gene Ontology (GO) - Biological Process for LOC646203 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646203 Gene

Drugs & Compounds for LOC646203 Gene

No Compound Related Data Available

Transcripts for LOC646203 Gene

mRNA/cDNA for LOC646203 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646203 Gene

No ASD Table

Relevant External Links for LOC646203 Gene

GeneLoc Exon Structure for
LOC646203

Expression for LOC646203 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC646203 Gene

mRNA differential expression in normal tissues according to GTEx for LOC646203 Gene

This gene is overexpressed in Liver (x24.3).
genes like me logo Genes that share expression patterns with LOC646203: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646203 Gene

Orthologs for LOC646203 Gene

Evolution for LOC646203 Gene

ENSEMBL:
Gene Tree for LOC646203 (if available)
TreeFam:
Gene Tree for LOC646203 (if available)

No data available for Orthologs for LOC646203 Gene

Paralogs for LOC646203 Gene

No data available for Paralogs for LOC646203 Gene

Variants for LOC646203 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646203 Gene

Disorders for LOC646203 Gene

No disorders were found for LOC646203 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646203 Gene

Publications for LOC646203 Gene

No publications were found for LOC646203 Gene.

Products for LOC646203 Gene

Sources for LOC646203 Gene

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