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Aliases for LOC645513 Gene

Aliases for LOC645513 Gene

  • Septin 7 Pseudogene 3
  • AC093752.1 5

External Ids for LOC645513 Gene

Previous GeneCards Identifiers for LOC645513 Gene

  • GC04P120584
  • GC04P120366
  • GC04P116135

Summaries for LOC645513 Gene

GeneCards Summary for LOC645513 Gene

LOC645513 (Septin 7 Pseudogene) is a Pseudogene.

Additional gene information for LOC645513 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC645513 Gene

Genomics for LOC645513 Gene

GeneHancer (GH) Regulatory Elements for LOC645513 Gene

Promoters and enhancers for LOC645513 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I119453 Promoter/Enhancer 1.6 Ensembl ENCODE 605.2 +0.2 218 2.4 HDGF PKNOX1 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZBTB7B LOC645513 GTF2IP12 ENSG00000250950 ENSG00000260091 KLHL2P1
GH04I119298 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 50.2 -154.8 -154838 3.7 PKNOX1 CLOCK FOXA2 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 C4orf3 GC04P119302 PIR34278 LOC645513 FABP2 USP53 KLHL2P1 LOC101929762
GH04I119206 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 30.9 -243.8 -243771 8.1 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 USP53 LOC101929762 LOC645513 FABP2 METTL14 LOC729218 KLHL2P1 MRPL42P1
GH04I119623 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 35.4 +173.3 173303 9.8 SIN3A ZNF2 ZNF48 ZNF121 GLIS2 ZNF207 ZNF143 FOS KLF13 SP3 GC04M119628 GC04P119639 PDE5A LOC105377396 LOC645513 USP53 FABP2 KLHL2P1 ENSG00000260091
GH04I119319 Promoter/Enhancer 1 EPDnew ENCODE 57.3 -133.5 -133506 4 PKNOX1 PRDM6 BCL6B FEZF1 ZNF843 SP7 FABP2 LOC645513 KLHL2P1 ENSG00000260091 C4orf3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC645513 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC645513 gene promoter:

Genomic Locations for LOC645513 Gene

Genomic Locations for LOC645513 Gene
chr4:119,454,783-119,552,025
(GRCh38/hg38)
Size:
97,243 bases
Orientation:
Plus strand
chr4:120,375,938-120,473,180
(GRCh37/hg19)

Genomic View for LOC645513 Gene

Genes around LOC645513 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC645513 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC645513 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC645513 Gene

Proteins for LOC645513 Gene

Post-translational modifications for LOC645513 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC645513 Gene

Domains & Families for LOC645513 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC645513 Gene

Function for LOC645513 Gene

Phenotypes From GWAS Catalog for LOC645513 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC645513 Gene

Localization for LOC645513 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC645513 Gene

Pathways & Interactions for LOC645513 Gene

SuperPathways for LOC645513 Gene

No Data Available

Interacting Proteins for LOC645513 Gene

Gene Ontology (GO) - Biological Process for LOC645513 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC645513 Gene

Drugs & Compounds for LOC645513 Gene

No Compound Related Data Available

Transcripts for LOC645513 Gene

mRNA/cDNA for LOC645513 Gene

(5) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC645513 Gene

Uncharacterized LOC645513:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC645513 Gene

No ASD Table

Relevant External Links for LOC645513 Gene

GeneLoc Exon Structure for
LOC645513

Expression for LOC645513 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC645513 Gene

SOURCE GeneReport for Unigene cluster for LOC645513 Gene:

Hs.677546
genes like me logo Genes that share expression patterns with LOC645513: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC645513 Gene

Orthologs for LOC645513 Gene

Evolution for LOC645513 Gene

ENSEMBL:
Gene Tree for LOC645513 (if available)
TreeFam:
Gene Tree for LOC645513 (if available)

No data available for Orthologs for LOC645513 Gene

Paralogs for LOC645513 Gene

No data available for Paralogs for LOC645513 Gene

Variants for LOC645513 Gene

Sequence variations from dbSNP and Humsavar for LOC645513 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000004355 -- 119,476,055(+) TT/T intron_variant
rs1000051725 -- 119,487,807(+) C/T intron_variant
rs1000238057 -- 119,483,457(+) T/C intron_variant
rs1000292107 -- 119,482,936(+) A/T intron_variant
rs10004144 -- 119,463,276(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC645513 Gene

Variant ID Type Subtype PubMed ID
nsv967793 CNV duplication 23825009
nsv967792 CNV duplication 23825009
esv2538163 CNV loss 19546169

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC645513 Gene

Disorders for LOC645513 Gene

Additional Disease Information for LOC645513

No disorders were found for LOC645513 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC645513 Gene

Publications for LOC645513 Gene

No publications were found for LOC645513 Gene.

Products for LOC645513 Gene

Sources for LOC645513 Gene

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