Aliases for LOC645485 Gene

Subcategory (RNA class) for LOC645485 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC645485 Gene

  • Uncharacterized LOC645485 3
  • Novel Transcript 5
  • NONHSAG010791.2 91
  • HSALNG0090149 164
  • Lnc-TSPAN11-3 165
  • AC010198.1 5

External Ids for LOC645485 Gene

Previous GeneCards Identifiers for LOC645485 Gene

  • GC12P030798
  • GC12U901030
  • GC12P030909

Summaries for LOC645485 Gene

GeneCards Summary for LOC645485 Gene

LOC645485 (Uncharacterized LOC645485) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC645485 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC645485 Gene

Genomics for LOC645485 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC645485 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC645485 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC645485 Gene

Genomic Locations for LOC645485 Gene
chr12:30,755,041-30,780,739
(GRCh38/hg38)
Size:
25,699 bases
Orientation:
Plus strand
chr12:30,908,008-30,933,673
(GRCh37/hg19)
Size:
25,666 bases
Orientation:
Plus strand

Genomic View for LOC645485 Gene

Genes around LOC645485 on UCSC Golden Path with GeneCards custom track
LOC645485 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC645485 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC645485 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC645485 Gene

Proteins for LOC645485 Gene

Post-translational modifications for LOC645485 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC645485 Gene

Domains & Families for LOC645485 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC645485 Gene

Function for LOC645485 Gene

Phenotypes From GWAS Catalog for LOC645485 Gene

genes like me logo Genes that share phenotypes with LOC645485: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC645485 Gene

Localization for LOC645485 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC645485 Gene

Pathways & Interactions for LOC645485 Gene

PathCards logo

SuperPathways for LOC645485 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC645485 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC645485 Gene

Drugs & Compounds for LOC645485 Gene

No Compound Related Data Available

Transcripts for LOC645485 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC645485 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001DAD49_9606 lncRNA 1552 4

Ensembl: ENST00000500076 (view in UCSC) ,

LncBook: HSALNT0187299,

LNCipedia: lnc-TSPAN11-3:1,

NONCODE: NONHSAT027513.2,

URS00008C27F1_9606 lncRNA 1552 1

RefSeq: NR_135046,

URS00009B3C16_9606 lncRNA 1551 2

LncBook: HSALNT0187300,

NONCODE: NONHSAT162012.1,

URS0000D595CF_9606 lncRNA 2875 1

LNCipedia: lnc-TSPAN11-3:3,

URS00008B6C22_9606 lncRNA 1551 1

LNCipedia: lnc-TSPAN11-3:2,

LOC645485 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC645485 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC645485 Gene

No ASD Table

Relevant External Links for LOC645485 Gene

GeneLoc Exon Structure for
LOC645485

Expression for LOC645485 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC645485 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC645485

SOURCE GeneReport for Unigene cluster for LOC645485 Gene:

Hs.232332
genes like me logo Genes that share expression patterns with LOC645485: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC645485 Gene

Orthologs for LOC645485 Gene

Evolution for LOC645485 Gene

ENSEMBL:
Gene Tree for LOC645485 (if available)
TreeFam:
Gene Tree for LOC645485 (if available)

No data available for Orthologs for LOC645485 Gene

Paralogs for LOC645485 Gene

No data available for Paralogs for LOC645485 Gene

Variants for LOC645485 Gene

Additional dbSNP identifiers (rs#s) for LOC645485 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC645485 Gene

Disorders for LOC645485 Gene

No disorders were found for LOC645485 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC645485 Gene

Publications for LOC645485 Gene

No publications were found for LOC645485 Gene.

No data available for Mastermind for LOC645485 Gene

Products for LOC645485 Gene

Sources for LOC645485 Gene